YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77963670
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWAAVDYPQ LVNDIQSRLD KTSQLYQQQN NDEARTTVQM AYFELFENLE GPIRINISAQ  60
   61 KSYQMEAAFG EIRRMIGEGR PQAEVDNKIN WLKSELTGVL PVLADGHKLT AEQQHAAYEN 120
  121 SDIAVYWQQS FKIIDDLLAQ AISEYQAGNF AAASQSVQQA HYQGFKNSEM EMSVRGNRSA 180
  181 QDAAAINQQF TALIDLTSKP DQLTEVAYRV TGLLQTIEDI LPGLPTTREQ QQVTADQPNA 240
  241 GQSSASGANA DGQANTDWGV VSDKINQAVT AAIDEYQKGQ TTPAMMAVQD AYFDLFEASG 300
  301 MENKIGSRDA AFKSTLEGHF TRLVSFMKAG QPVEQLQAEA LALQKDLSSA VEMLGGGDET 360
  361 DWSLFIYSLL IIVREGLEAL LIVAAIVAYL VKNNHQDKLP LIRQSVVVAL IASVLTAFVF 420
  421 QWLFANSGQS RELLEGFTMM IAVVMLFSMS YWLLSKTEAR QWKAYLEGKF SKSLSSGSMI 480
  481 GLWLTSFLAV YREGAETVLF YLALMGDAST TSGHLSILAG FGVGCVFLLV AYLVMRFTVV 540
  541 KLPLKPFFMF TGGFMYLMAF VFAGKSVLEL IEGKLFEPTL LPGVPEISWL GIYPYLETLI 600
  601 PQGILLIAAL VALWVMQRRG RAIPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	370	0.95
Transmembrane Helix	371	391	0.89
Cytoplasmic	392	400	0.90
Transmembrane Helix	401	425	0.85
Non-Cytoplasmic	426	432	0.95
Transmembrane Helix	433	454	0.92
Cytoplasmic	455	472	0.91
Transmembrane Helix	473	491	0.93
Non-Cytoplasmic	492	512	0.86
Transmembrane Helix	513	535	0.92
Cytoplasmic	536	546	0.78
Transmembrane Helix	547	566	0.91
Non-Cytoplasmic	567	597	0.88
Transmembrane Helix	598	616	0.95
Cytoplasmic	617	625	0.94