YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238718325, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.93
Transmembrane Helix	18	42	0.86
Cytoplasmic	43	55	0.93
Transmembrane Helix	56	79	0.87
Non-Cytoplasmic	80	96	0.92
Transmembrane Helix	97	120	0.88
Cytoplasmic	121	126	0.88
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	184	0.96
Transmembrane Helix	185	208	0.90
Cytoplasmic	209	218	0.91
Transmembrane Helix	219	238	0.91
Non-Cytoplasmic	239	322	0.97
Transmembrane Helix	323	346	0.88
Cytoplasmic	347	357	0.91
Transmembrane Helix	358	379	0.94
Non-Cytoplasmic	380	407	0.95
Transmembrane Helix	408	429	0.93
Cytoplasmic	430	483	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGLTALELA RIQFAFTISF HIIFPAITIG LASFLAVLEG LWLKTKNEDY RDLYHFWSKI  60
   61 FAVNFGMGVV SGLVMAYQFG TNWSFFSEFA GSITGPLLTY EVLTAFFLEA GFLGVMLFGW 120
  121 NRVGPGLHFF ATCMVALGTL MSTFWILASN SWMQTPQGFE VINGQVVPVD WLKVIFNPSF 180
  181 PYRLLHMSTA AFLASAFFVG ASAAWHLLRK RDTPVMRKML SMAMWMALIV APLQAVIGDA 240
  241 HGLNTLEYQP AKIAAIEGHW ENKPGEATPL ILFGWPDMKQ EKTHFAVEIP YLGSLILTHS 300
  301 LEKQIPALKS FPPEDRPNST IVFWSFRIMV GLGMLMILAG FWSLWLRWRG GLYQSRPFLY 360
  361 FVLWMGPSGL IAILAGWFTT EVGRQPWIVY GLQRTRDAVS SHGEMHMSIS LLVFIVVYGS 420
  421 VFGVGYAYMM RLIRQGPKAH EDSQPEQGGP GQHKTPARPL SAVSEPFDTD HNLSPTDNNH 480
  481 HRS