YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77972520
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFSLYGLF LAKVVTIVVA IGAVVLLIVS QGMRKQGQRG ELNLVDLGEQ YKEMQREMRL  60
   61 ARMNHAEQKA WNKEFKKQQK SDQKLKKQRA KAGAVATGKP CLYVIDFKGS IDAHEVTSLR 120
  121 EEISAVLAVA TAQDEVLLRL ESPGGVVHGY GLAASQLERL RHKGIRLTVA VDKVAASGGY 180
  181 MMACVADRII SAPFAIIGSI GVVAQIPNFH RLLKKNDIDV ELHTAGEFKR TLTLFGENTE 240
  241 QGREKFREDL NETHLLFKQF VQQQRPSLDI DAVATGEHWF GTQAKEKGLV DAIGTSDDLL 300
  301 IAEMDNHEVI GVRYSRRKRL MDRFTGSAAE SVDRLLLRWW QRGEKPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.53
Transmembrane Helix	9	30	0.92
Cytoplasmic	31	188	0.57
Transmembrane Helix	189	204	0.41
Non-Cytoplasmic	205	348	0.71