YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77973397, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKSLFLSA LAMSVGLGLA SVPMVNAAAL PAAVAGQSVP SLAPMLEKVL PAVVSVHVSG  60
   61 TQAQQQRLPE EFKFFFGPNA PTGKESNRPF EGLGSGVIIN AEKGYVLTNN HVINNADKIR 120
  121 VQLNDGREYD AKLLGRDEQT DIALLQLTDA KNLTAIKMAD SDNLRVGDFA VAVGNPFGLG 180
  181 QTATSGIISA LGRSGLNLEG LENFIQTDAS INRGNSGGAL VNLNGELIGI NTAILAPGGG 240
  241 NIGIGFAIPS NMAQNLSQQL IEFGEVKRGL LGIRGSEMTA DIAKAFNIDA QRGAFVSEVL 300
  301 PKSAASKAGI KAGDVLVSVD GKAISSFAEL RAKVGTTGPG KAIKVGLLRD GKPLEVTVTL 360
  361 ENSSPTSTSA DTLSPSLQGA SLSNGEIKGG SKGVKVESVT KGSPAAQSGL QKDDVIIAVN 420
  421 RVRVQDIAEL RKTIDTKPAV IALNIVRGEE NIYLLIR

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	457	0.99