YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238795170, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	28	0.95
Cytoplasmic	29	41	0.89
Transmembrane Helix	42	64	0.89
Non-Cytoplasmic	65	88	0.87
Transmembrane Helix	89	107	0.93
Cytoplasmic	108	114	0.89
Transmembrane Helix	115	136	0.92
Non-Cytoplasmic	137	142	0.75
Transmembrane Helix	143	162	0.94
Cytoplasmic	163	198	0.98
Transmembrane Helix	199	221	0.88
Non-Cytoplasmic	222	234	0.70
Transmembrane Helix	235	254	0.89
Cytoplasmic	255	264	0.81
Transmembrane Helix	265	284	0.94
Non-Cytoplasmic	285	290	0.78
Transmembrane Helix	291	312	0.94
Cytoplasmic	313	328	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNTVGTPLL WGSFAVVVTI MLAIDLLLQG RRGAQTMTLR QAACWSLVWV SLSLLFNAGF  60
   61 WWYLAETVGR EVADKQALAF LTGYLIEKAL AVDNVFVWLM LFSYFAVPAN LQRRVLIYGV 120
  121 LGAIVLRTIM IFAGSWLVSQ FSWILYLFGA FLLFTGIKMA LAKEDDTPIG EKPLVRWIRN 180
  181 HLRMTDELHG DRFTVRKNGL LYATPLVLVL ILVELSDVIF AVDSIPAIFA VTTDPFIVLT 240
  241 SNLFAILGLR AMYFLLANVA ERFSMLKYGL SVILVFIGTK MMIIDLFHIP IGISLGVVAG 300
  301 ILALTLLINV WVNHRADRRS AADKTAHK