YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238724681, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQENKVVDDI NNNSHERFRA ARKSTWISVL VNCFLTLGQV ITGIFSGSQG LIADGIHSLS  60
   61 DLVADFVVLI ANHKSKKDPD DDHHYGHHRY ENGASLILGA ILLIVGIGML WSAANKIQHP 120
  121 EAIPQVHIIA LWVALAALVF KELLFRYMLA VATRVKSSML VANAWHARSD AASSLVVSLG 180
  181 IIGNLLGFKF LDPVAALIVG LIVTKMGYSF MSDSLHDLMD RAVDIETEEK IKTTLLATPG 240
  241 VDGIHDLKTR KMGDLVIVDV HLEIDGNLSV KEGHDIAVTA RNAVLDNHHV LNVMTHVDPS 300
  301 NIDNKKPSNN GDYL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	45	0.91
Non-Cytoplasmic	46	54	0.66
Transmembrane Helix	55	73	0.55
Cytoplasmic	74	92	0.59
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	122	0.57
Transmembrane Helix	123	145	0.85
Cytoplasmic	146	164	0.56
Transmembrane Helix	165	186	0.68
Non-Cytoplasmic	187	192	0.46
Transmembrane Helix	193	209	0.73
Cytoplasmic	210	314	0.85