YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78390357, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	220	0.93
Transmembrane Helix	221	243	0.87
Cytoplasmic	244	257	0.87
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	311	0.96
Transmembrane Helix	312	333	0.91
Cytoplasmic	334	340	0.80
Transmembrane Helix	341	360	0.91
Non-Cytoplasmic	361	391	0.89
Transmembrane Helix	392	411	0.94
Cytoplasmic	412	425	0.82
Transmembrane Helix	426	447	0.91
Non-Cytoplasmic	448	462	0.88
Transmembrane Helix	463	480	0.94
Cytoplasmic	481	488	0.86
Transmembrane Helix	489	509	0.93
Non-Cytoplasmic	510	526	0.84
Transmembrane Helix	527	546	0.96
Cytoplasmic	547	566	0.92
Transmembrane Helix	567	589	0.93
Non-Cytoplasmic	590	607	0.85
Transmembrane Helix	608	629	0.90
Cytoplasmic	630	637	0.89
Transmembrane Helix	638	659	0.90
Non-Cytoplasmic	660	665	0.78
Transmembrane Helix	666	685	0.93
Cytoplasmic	686	708	0.83
Transmembrane Helix	709	728	0.93
Non-Cytoplasmic	729	834	0.88
Transmembrane Helix	835	854	0.92
Cytoplasmic	855	876	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAAACLYG AGRSRQGQER DRRGASGACR QDRAAQATRR RRKNTRTGWV NHDAQAAAVD  60
   61 DDRRSGGGSG GRRGPGAERV ARFHRVLLDA ADGRRTAYRR RQAVPARRVG GTRHTGARRQ 120
  121 SGGVLQSVRR QRHGAGDLQR HPAGSVPRRA GRGDRRRAGY SRRVQGRYRA RQARRKLHAE 180
  181 GSRRRAQETG PLAGTVRRQA RRAVRRDTDQ RTGGRAMIAE AGHYALVLAL GLALIQASVP 240
  241 VLGARLRDPA LMNVARSAAL AQLLFVGLSF TALVYLYVIS DFSVANVFEN SHSAKPLLYK 300
  301 ITGVWGNHEG SMLLWVSILA LFGGLVAAFG NNLPLSLRAH VLAVQAWIAT AFYLFILITS 360
  361 NPFLRLDDPP IEGRDLNPVL QDIGLAIHPP MLYLGYVGFS ISFSFAIAAL IEGRVDAAWA 420
  421 RWVRPWTLMA WIFLTLGIAM GSYWAYYELG WGGWWFWDPV ENASLMPWLA GTALLHSAVV 480
  481 MEKRNALKVW TILLSILTFS LSLLGTFLVR SGVLTSVHAF ATDPTRGVFI LLILCVFIGG 540
  541 SLSLYASRAS SLKQGGLFAP ISREGALVLN NLFLTTACAT VFIGTLYPLA LEVLTGDKIS 600
  601 VGAPFFNLTF GPLFVPLLLA VPFGPLLAWK RGDLIGAAQR LIAAGVAALI AIALLWSFVH 660
  661 GGSTLAPLAI GLAVFVIAGA LVDLVERIGL FRNPLGIVWR RARGLPRSTW GTAFAHAGVG 720
  721 VALIGIVCET TWNSEYIGTM SAGQSAKLAG YELKLDGLQS RQGPNFRELL AQFTVTEAGL 780
  781 PIGVMNPSKR AFAARGSSTS EAALLTRGVS QLYVSLGEPT ADGGIAVRIY HKPMVLLIWF 840
  841 GPLLMAFGGL LSLSDRRLRV GAPKPARQAR GLQAAE