YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78684550, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLCLLRLS AIGDVCHAVA MVQAIQRQYP QLKITWVIGK LEYQLLKHLP GIEFVIFDKS  60
   61 QGWRSYFNLH KALKGRRFDV LLHMQVALRA TLASLAISAK IRVGFDRARA KEGQWLVTNH 120
  121 RVEPLAEPHV LDGFMGFAKA IGVSDITPSW NIPVPQADTE FAQRQIADGE KVLVICAAAS 180
  181 KAERNWLPER YAAVAQHAVN KGYRVILCGG PTALENTLAN DIANACSAKL DNLVGKTSLT 240
  241 QLLALLKRAS LVLAPDTGPA HMAVTQGTPV IGLYAHSNPG RTGPYLSQQY VVSAYQEAIA 300
  301 LQQSGEVKWG TRAKGEHLMA LISVEAVIEK FDQVIQQTHS

Type	Start	End	Confidence
Signal Peptide	1	18	0.91
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	340	0.99