YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78505454, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.68
Transmembrane Helix	15	36	0.78
Cytoplasmic	37	43	0.66
Transmembrane Helix	44	62	0.89
Non-Cytoplasmic	63	219	0.93
Transmembrane Helix	220	243	0.87
Cytoplasmic	244	253	0.84
Transmembrane Helix	254	273	0.94
Non-Cytoplasmic	274	278	0.72
Transmembrane Helix	279	298	0.87
Cytoplasmic	299	305	0.83
Transmembrane Helix	306	335	0.82
Non-Cytoplasmic	336	371	0.87
Transmembrane Helix	372	393	0.88
Cytoplasmic	394	400	0.67
Transmembrane Helix	401	421	0.87
Non-Cytoplasmic	422	456	0.81
Transmembrane Helix	457	479	0.86
Cytoplasmic	480	484	0.94
Transmembrane Helix	485	505	0.92
Non-Cytoplasmic	506	773	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGFIFGFSA TLLSAMLWPS LLPINSLPYL CLGALILFKK APSLSGILFA MCWLTGFCLV  60
   61 LSRQDLPLSQ QPIQVRAEII SLVSQNSDWV SFDIIVDKPN LIFWPRAKLR LTWQSPEAVQ 120
  121 VGQVWSFTLM PKTISSVLNQ GGYNEQKQLI SQHIVGKGRV LHATLETSHF SLRNHLISQL 180
  181 SPKLPTFEQG DILLALILGD KQLIPASKWQ ALRQTGTGHL VAISGLHLSV ITAWVYVCTL 240
  241 FLLSRFAAHP SRRNLVIALL LAGGCALFYS YLAGFAVSTQ RALVMILLIM LLSLLRRYSS 300
  301 AWDRLLFALF IVLLLDPLAC LSAGFWLSFC ALAIILYTLE SAPRIQPVEG NATFRAKARG 360
  361 RLAQFWSIQW RLSLVLGLVQ AVFFGGLSVH SLWMNMLVVP WFSLIVIPLS MLAFILWWVG 420
  421 TLLGQAWFAL FHLADLTLLP YGKLLELSGD LPAHWHSVSE TLLGASLCAL LALILWRYLP 480
  481 HHSRYGLWHL PLALLFIPFI LVIFPRVTES SSPQWTLHLL DVGQGLAVVI EQDKRALIYD 540
  541 TGAAFGEDFS YSERVVIPFL NSKGLAQVDY IVVSHRDNDH AGGAEVLAKA YPRANWITDV 600
  601 AHLAGMPCVP QQIQWQQLTL NFISPQTAKG GNNASCVLRI DDGAHSLLLS GDIEKETEAV 660
  661 LIEQALKGAE LKSQVLIAPH HGSRTSSTPA FIDAVAPELV LFPSGLNNRY GFPKPDVVAR 720
  721 YQARNIQYLT TGREGQISVS FNAGRLEVKT YRRDLAPFWY NRLFRFGDLI NPE