YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117613937, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNSTNQTVK NKGIYLLPNL FTTAGLFSGF YAVIASMNAN FEAAAIAIFV AMICDGLDGR  60
   61 VARLTNTQSD FGAEYDSMAD MVSFGMAPAL LAYNWALADL GKVGWLAAFI YCAGAALRLA 120
  121 RFNTQVGVAD KRYFQGLASP AAAAVIAGSI WLGNQYNLDG KNISWIAGLI TAITGLLMVS 180
  181 NFRYHSFKEI DWRGKVNFIA ILFVVGVFVV VSVQPALILC IGFYLYAISG PVITIRTVRK 240
  241 LKVAHIVGDG EHEKEQDAGE GPKSSTNSAD KP

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	35	0.92
Non-Cytoplasmic	36	42	0.76
Transmembrane Helix	43	62	0.83
Cytoplasmic	63	76	0.80
Transmembrane Helix	77	97	0.82
Non-Cytoplasmic	98	102	0.81
Transmembrane Helix	103	122	0.92
Cytoplasmic	123	132	0.93
Transmembrane Helix	133	153	0.94
Non-Cytoplasmic	154	162	0.87
Transmembrane Helix	163	184	0.92
Cytoplasmic	185	195	0.83
Transmembrane Helix	196	228	0.82
Non-Cytoplasmic	229	272	0.49