YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78512040, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWNEPGNKG NDPWGNKGGN DKGPPDLDEV FRNLSKRFGG KGNGSSGQNF SSFSVIIILA  60
   61 IAFVVWGLSG FYTIKEAERG VALRFGQHIG EVGPGLHWKA TFIDQIYPVD VQSVRSIPAS 120
  121 GSMLTSDENV VKVELDVQYR ILDAYSYLFS AVDANASLRE ATDSALRYVI GHNKMDDILT 180
  181 TGRDTIRRDT WKELERIIEP YKLGLAIVDV NFLPARPPEE VKDAFDDAIA AQEDEQRFIR 240
  241 EAEAYAREVE PKARGEVERM AQQANAYKER EVLEARGKVA RFELLLPEYQ AAPEVTRKRL 300
  301 YLDAMQQVMT DTNKVLIDTK NSGNLMYLPL DKLMKEKPVT MPEAENKSQQ NVNSSSMSTT 360
  361 RISEPLSGRP SREDRARQGR E

Type	Start	End	Confidence
Cytoplasmic	1	49	0.57
Transmembrane Helix	50	74	0.82
Non-Cytoplasmic	75	381	0.62