YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78509975, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.89
Transmembrane Helix	12	35	0.83
Cytoplasmic	36	65	0.76
Transmembrane Helix	66	87	0.67
Non-Cytoplasmic	88	88	0.38
Transmembrane Helix	89	111	0.61
Cytoplasmic	112	138	0.61
Transmembrane Helix	139	161	0.89
Non-Cytoplasmic	162	176	0.60
Transmembrane Helix	177	195	0.93
Cytoplasmic	196	204	0.50
Transmembrane Helix	205	226	0.91
Non-Cytoplasmic	227	233	0.54
Transmembrane Helix	234	258	0.83
Cytoplasmic	259	292	0.56
Transmembrane Helix	293	316	0.86
Non-Cytoplasmic	317	350	0.46
Transmembrane Helix	351	375	0.87
Cytoplasmic	376	388	0.73
Transmembrane Helix	389	408	0.76
Non-Cytoplasmic	409	419	0.62
Transmembrane Helix	420	436	0.92
Cytoplasmic	437	495	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEIVNAVNN IVWSPALVYL CLGVGLFFSL RSRFLQLRHL PEMIRLMFDG KSTDAGVSSF  60
   61 QALAMTLAGR VGTGNIAGVA TAITFGGPGA LFWMWMVAFL GASSAFVEST LGQVYKEKIN 120
  121 GEYRGGPAFY IEKGLGMKWY AWTFAIATIF ACGILLPGVQ ANSIGSSLKT AFDIDPNVTA 180
  181 AILAMLLGFI IFGGVKRIAQ FASTVVPFMA LGYIIVACVI IALNIGQLPD IIMLILKSAF 240
  241 GLDAGFGAIL GLAIMWGVKR GIYSNEAGQG TGPHASSAAA VSHPAKQGLV QAFSVYIDTL 300
  301 FVCSATGFML LITGLYNVQG PEGVALYTGI AGVAAGPGYV QTAMESMMPG FGNMFVAVAL 360
  361 FFFAFTTIVA YYYIAETNIA YINRKVNRPW LTVVLKVVLM ASTVYGTVKT ADLAWGMGDI 420
  421 GVGLMAWLNI IAIILLQRIA FTCLKDYESQ QKQGIEPLFD PEKLGIPHAD YWVERKNAQD 480
  481 EQTALNQSGE NPKAS