YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78691964, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.15
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSNLSDMA KNLILWVVIA VVLMSVFQGY SPSSSSSQKM DYSTFLDNVR DGQVASVEVK  60
   61 SDQRTIEGSK RTGEKFTTIM PLYDQDLIND LDRKGITMKG QEAEESGFLT QIFISWFPML 120
  121 LLIGVWIFFM RQMQGGGGKG AMSFGKSKAK LMSEDQIKTT FADVAGCDEA KEEVKELVDY 180
  181 LRDPTKFQKL GGRIPTGVLM VGPPGTGKTL LAKAIAGESK VPFFTISGSD FVEMFVGVGA 240
  241 SRVRDMFEQA KKSAPCIIFI DEIDAVGRQR GAGLGGGHDE REQTLNQMLV EMDGFEGNEG 300
  301 IIVIAATNRP DVLDSALLRP GRFDRQVVVG LPDVRGREQI LKVHMRKVPL SEDVKASVIA 360
  361 RGTPGFSGAD LANLVNEAAL FAARGNRRVV GMEEFERAKD KIMMGAERRS MVMSEAEKEM 420
  421 TAYHEAGHAI VGCLVPEHDP VHKVTIIPRG RALGVTFFLP EADAISQSRR KLESQISVAY 480
  481 GGRLAEELIY GSEKVSTGAS QDIKYATSIA RNMVTQWGFS DKLGPLLYAE EEGEVFLGRS 540
  541 MGKAKAMSDE TATLIDAEVK AFIDKNYGRA KQILLDNIDI LHSMKDALMK YETIDSLQID 600
  601 DLMNRREVRQ PADWQADDNG SNDKGSDKGE PAVKVDEVVK TAPVETELKD ADESPVK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.73
Transmembrane Helix	12	31	0.83
Non-Cytoplasmic	32	107	0.87
Transmembrane Helix	108	130	0.73
Cytoplasmic	131	222	0.64
Transmembrane Helix	223	237	0.15
Non-Cytoplasmic	238	657	0.58