YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78513738, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.63
Transmembrane Helix	6	25	0.87
Cytoplasmic	26	62	0.76
Transmembrane Helix	63	85	0.91
Non-Cytoplasmic	86	137	0.94
Transmembrane Helix	138	160	0.87
Cytoplasmic	161	176	0.85
Transmembrane Helix	177	198	0.88
Non-Cytoplasmic	199	254	0.92
Transmembrane Helix	255	275	0.92
Cytoplasmic	276	283	0.80
Transmembrane Helix	284	305	0.94
Non-Cytoplasmic	306	327	0.85
Transmembrane Helix	328	350	0.88
Cytoplasmic	351	356	0.70
Transmembrane Helix	357	376	0.81
Non-Cytoplasmic	377	382	0.60
Transmembrane Helix	383	402	0.93
Cytoplasmic	403	421	0.84
Transmembrane Helix	422	446	0.87
Non-Cytoplasmic	447	485	0.71
Transmembrane Helix	486	511	0.77
Cytoplasmic	512	526	0.56
Transmembrane Helix	527	552	0.86
Non-Cytoplasmic	553	567	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIGWIQIL LYCAVVVALA KPLGWYMTRV FNGERTFLSL VLRPLETSIY WIGGVDERRE  60
   61 QHWLTYTVAM LLFHVGGFLV IYAVMRLQAV LPFNPAGQSA VAEDLSFNTA ISFLTNTNWQ 120
  121 NYGGESTLSY LVQMLGLTHQ NFLSAATGIV LAIALIRGFA RASARTVGNF WVDVVRCTLY 180
  181 ILLPLCIVYT LVLVWQGIPQ TLGPYVEATT LEGAKQTIAV GPVASQVAIK MLGTNGGGFF 240
  241 NANAAHPFEN PTALSNFIQM ISIFALGAAL TNVFGRMVGN QRQGWAILAV MGVLFIAGVA 300
  301 VTYWAEASGT DVLNALGLTG GNMEGKEVRF GIVASALFAV ITTAASCGAV NAMHDSFTAL 360
  361 GGMIPLINMQ LGEIIIGGVG AGLYGMLLFV VLAIFVAGLM VGRTPEYVGK KIEAREVKMA 420
  421 MLAILVLPLM YLGWTAVAVV LPSAVASMAN AGPHGFTEVL YAFTSATANN GSAFGGLTGN 480
  481 TFFYNLTLAS SMFVGRFFMI IPAMAIAGSL AEKKSIPPSA GTLPTTGGLF VGLVVGVILI 540
  541 IGGLTFFPAL ALGPIVEHLA MTAGTVF