YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83032266
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENQNSTRM TRAAAKRKAS VTDENPVSKK RVVLGELPNN SNVPAPLIPL QERETQKPKS  60
   61 TLFAAKKQTK TPPIPQTVDF ESGSSDPQMC GPFVADICAY LREMEGKLKQ RPLHDYIEKV 120
  121 QSDLTPSMRG VLMDWLVEVA EEYKLVSDTL YLTVSYVDRF LSAKPINRQR LQLVGVSAML 180
  181 IASRKYEEIS PPKVEDFVYI TDNTFTRQDV VSMEADILLA LQFELGCPTI KTFLRRFTRV 240
  241 AQEDFNESLL QIECLCCYLS ELSLLDYSCV KFLPSMLAAS AVFLARFIIR PKQRPWNQML 300
  301 EEYTKYKASD LQQPVGIIHD LYLSRRGNSL EAVRNKYKQH KFKCVATMPV SPELPQAFFE 360
  361 DVTIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	269	0.94
Transmembrane Helix	270	289	0.55
Cytoplasmic	290	365	0.53