YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79151833, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLYLLLLA FTVVLSTHAR VKHNLFMFSG CSDTEKEALY GPEGEEMWHS DFKLKQGVAT  60
   61 LPEFADPLSF PGAYEESVAD QEVCKQNLAT SIKAYNSPPE EMEPPETSIY PRNEVLLGVD 120
  121 NVLICHVTGF FPPPVDVSWS RNNVKVTEGV DVSQYRPRSD QTFHMFSSLK IRPAAGDIYS 180
  181 CTVNHAALQE QPQTKLWVVP QGDVLSPCLT PVLLSGLGFT VGLLGLATGI FFFVKGSTAD 240
  241 VSDAAVSKKK LMQFYQ

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	213	0.99
Transmembrane Helix	214	234	0.75
Cytoplasmic	235	256	0.76