YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82658274, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVNSFQRF MNTRAAANCR YQPTCYEHAA NCYTHALLIT PAFVGMALLH RLSDDRWERF  60
   61 TAWVYGMGLI ALFLVSTVFH IISWKKSHMR TMEHCFHMCD RVVIYFFIAA SYTTWLNLRE 120
  121 LGPLAAHMRW FVWLMAAAGT IYVFNYHEKY KLVELMFYLT MGFFPALVVT STTNTEGLSE 180
  181 LAFGGLVYCL GVFFFKCDGV IPFAHAIWHV FVALAAAIHY YAIWKYLYRS PALEDIRDA

Type	Start	End	Confidence
Cytoplasmic	1	31	0.87
Transmembrane Helix	32	52	0.85
Non-Cytoplasmic	53	60	0.86
Transmembrane Helix	61	82	0.94
Cytoplasmic	83	97	0.81
Transmembrane Helix	98	116	0.87
Non-Cytoplasmic	117	125	0.74
Transmembrane Helix	126	146	0.92
Cytoplasmic	147	154	0.80
Transmembrane Helix	155	173	0.91
Non-Cytoplasmic	174	202	0.49
Transmembrane Helix	203	223	0.90
Cytoplasmic	224	239	0.50