YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83318576
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSFPADLY SGISQALNTT HATLTLPIPS PDRDHLENQM LFLFDNYGQL LNITTTDIDM  60
   61 VNGMLVSIAI NYATQIGATF IMLAIMLLMT PRRRFKRLPT IISLLGLLLN LIRVVLLSLF 120
  121 YPSHWTDFYV LYTGDWQFVP RSDMSISVAA TVLSIPVTAL LLSALMVQAW SMMQLWTPLW 180
  181 RALVALVSGL LSVATVVLSF ANCIFQAENI LYATPLPDYW VRKLYLALTT GSISWFTFLF 240
  241 MIRLVMHMWT SRSILPSMKG LKAMDVLIIT NAILMLIPLL FAGLEFLDSS SGFESGSLTQ 300
  301 TSVVIVLPLG ILVAQRIATR GLLPDSEASG GPNSMPLSDL NLTGDDHHKD KRAEAGNINA 360
  361 TPTNTTTSFS SIAKSGVSCL PKAKRMTASS ASSSQRPLLM TTRSTISTND SSGFPSPSLH 420
  421 NATQYSMHMP NFPPVPYPGY SSRNTGVTSH IASDGHLHGQ QGVNQHPSVD HFDRELACID 480
  481 DEADDLDDDD SYPFDSKLEK AVMDDDVERG RTMPPHGGVR IEWTIETRSE ERMLNPNPFN 540
  541 NASAGVTQKP RSFE

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.88
Transmembrane Helix	68	90	0.89
Cytoplasmic	91	99	0.90
Transmembrane Helix	100	121	0.92
Non-Cytoplasmic	122	145	0.89
Transmembrane Helix	146	167	0.93
Cytoplasmic	168	181	0.77
Transmembrane Helix	182	204	0.91
Non-Cytoplasmic	205	223	0.93
Transmembrane Helix	224	246	0.91
Cytoplasmic	247	265	0.88
Transmembrane Helix	266	284	0.95
Non-Cytoplasmic	285	296	0.79
Transmembrane Helix	297	314	0.71
Cytoplasmic	315	554	0.75