YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPM1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSMRKMSSS FKRGSIKSST SGSQKGQKAW IEKTFCKREC IFVIPSTKDP NRCCCGQLTN  60
   61 QHIPPLPSVT PSSTAEDTKQ GDAQSGKWSV SKHTQSYPTD SYGILEFQGG GYSNKAMYIR 120
  121 VSYDTKPDSL LHLMVKDWQL ELPKLLISVH GGLQSFEMQP KLKQVFGKGL IKAAMTTGAW 180
  181 IFTGGVSTGV VSHVGDALKD HSSKSRGRLC AIGIAPWGMV ENKEDLVGKD VTRVYQTMSN 240
  241 PLSKLSVLNN SHTHFILADN GTLGKYGAEV KLRRQLEKHI SLQKINTRLG QGVPVVGLVV 300
  301 EGGPNVVSIV LEYLREDPPV PVVVCDGSGR ASDILSFAHK YCDEGGVINE SLRDQLLVTI 360
  361 QKTFNYSKSQ SHQLFAIIME CMKKKELVTV FRMGSEGQQD VEMAILTALL KGTNVSAPDQ 420
  421 LSLALAWNRV DIARSQIFVF GPHWPPLGSL APPVDTKVAE KEKKPPTATT KGRGKGKGKK 480
  481 KGKVKEEVEE ETDPRKIELL NWVNALEQAM LDALVLDRVD FVKLLIENGV NMQHFLTIPR 540
  541 LEELYNTRLG PPNTLHLLVR DVKKSNLPPD YHISLIDIGL VLEYLMGGAY RCNYTRKSFR 600
  601 TLYNNLFGPK RPKALKLLGM EDDEPPAKGK KKKKKKKEEE IDIDVDDPAV SRFQYPFHEL 660
  661 MVWAVLMKRQ KMAVFLWQRG EECMAKALVA CKLYKAMAHE SSESELVDDI SQDLDNNSKD 720
  721 FGQLAVELLD QSYKHDEQVA MKLLTYELKN WSNSTCLKLA VAAKHRDFIA HTCSQMLLTD 780
  781 MWMGRLRMRK NPGLKVIMGI LIPPTILFLE FRSYDDFSYQ TSKENEDGKE KEEENVDANA 840
  841 DAGSRKGDEE NEHKKQRSIP IGTKICEFYN APIVKFWFYT ISYLGYLLLF NYVILVRMDG 900
  901 WPSPQEWIVI SYIVSLALEK IREILMSEPG KLSQKIKVWL QEYWNITDLV AISMFMVGAI 960
  961 LRLQNQPYMG YGRVIYCVDI ILWYIRVLDI FGVNKYLGPY VMMIGKMMID MLYFVVIMLV1020
 1021 VLMSFGVARQ AILHPEEKPS WKLARNIFYM PYWMIYGEVF ADQIDRKTRI HIYAMEINPP1080
 1081 CGENLYDEEG KRLPPCIPGA WLTPALMACY LLVANILLVN LLIAVFNNTF FEVKSISNQV1140
 1141 WKFQRYQLIM TFHDRPVLPP PMIILSHIYI IVMRLSGRCR KKREGDQEER DRGLKLFLSD1200
 1201 EELKKLHEFE EQCVQEHFRE KEDEQQSSSD ERIRVTSERV ENMSMRLEEI NERENFMKAS1260
 1261 LQTVDLRLSQ LEELSGRMVG ALENLAGIDR SDLIQARSRA SSECEATYLL RQSSINSADG1320
 1321 YSMYRYHFNG EELLFEEPAL STSPGTVFRK KTCSFRVKEE DVKPHLDQPS SLHHTPGPSP1380
 1381 PATPGRSRLA LDGPLSTELR PGLDPGISAG ELDPRADFKS AEVAPSLNTA NVASTQLTVE1440
 1441 STVSHPLRES KLARYYPGDL NTYKTMKSRS FVYSEGRKLV RGLSNWGAEY SSIMDQTWNS1500
 1501 AEWRCQVQRI TRSRSTDIPY IVSEAASQDE FEDEHRESLL APQISRSALT VSDRPEKENL1560
 1561 LSVKPHQTLG FPCLRSRSLH GHPRSAKPSP SKLDRAGHAS STSNLAVMSD APEGQNTQQE1620
 1621 KGNPETEC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle