YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78708275, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSFDRWEK DPFFPAAEEV QESADRMESV YRRWLQERKE VGGGAVETAA ERGGGGWGRA  60
   61 AGDLRRELHT ALGTAKWQLD ELQRAIKSNY SVVLAGKDTR ARHDDFVSAI GHRILEVEKF 120
  121 LKESNTTEGR GPLSWVRLDE GEREELAHFL SAGTYQKRDE VVTITSAGDI EVGSNARRVK 180
  181 KGVSIDSSND SSGSAESGLV STKEETAPGH RRTASAYADI GSWTITIPDE ANGIDEQSFD 240
  241 DLPKVPLVKS PSSSVLMNAF QSKTRMKTKN GAKKLAGADQ QDVVETLPLT NSRSCQGFDG 300
  301 LFQRSKSCLS TSDDEDNCNK KLYGCLGAFR RLLQRSQYQV QYGRPIQLLI LAIVVLLVLI 360
  361 YAMKAIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	342	0.87
Transmembrane Helix	343	363	0.91
Cytoplasmic	364	367	0.71