YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82702338, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.91
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	41	0.81
Transmembrane Helix	42	62	0.91
Non-Cytoplasmic	63	94	0.92
Transmembrane Helix	95	114	0.92
Cytoplasmic	115	121	0.86
Transmembrane Helix	122	143	0.92
Non-Cytoplasmic	144	175	0.94
Transmembrane Helix	176	197	0.91
Cytoplasmic	198	209	0.86
Transmembrane Helix	210	231	0.91
Non-Cytoplasmic	232	246	0.89
Transmembrane Helix	247	264	0.95
Cytoplasmic	265	273	0.85
Transmembrane Helix	274	293	0.95
Non-Cytoplasmic	294	310	0.84
Transmembrane Helix	311	331	0.96
Cytoplasmic	332	350	0.95
Transmembrane Helix	351	374	0.90
Non-Cytoplasmic	375	391	0.89
Transmembrane Helix	392	411	0.94
Cytoplasmic	412	422	0.88
Transmembrane Helix	423	443	0.93
Non-Cytoplasmic	444	449	0.80
Transmembrane Helix	450	470	0.93
Cytoplasmic	471	490	0.91
Transmembrane Helix	491	512	0.94
Non-Cytoplasmic	513	616	0.98
Transmembrane Helix	617	636	0.95
Cytoplasmic	637	679	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGNFAL ILALLLALIQ GTLPIIGAAR GIPSWIALAR PVVQGQFVFV AIAFFCLAYS  60
   61 FVNSDFSVVN VAQNSNSNLP LQYRFAATWG SHEGSLLLWT FMLACWSVAV SVFSKHLPNE 120
  121 MVARVLGVMG LVSVGFLIFM LFTSNPFERM LPGAMEGSDL NPLLQDPGMV CHPPMLYMGY 180
  181 VGFSVAFAFA ISALLSGQMD ATWARWSRPW TTVAWMFLTI GIMMGSWWAY YELGWGGWWF 240
  241 WDPVENASFM PWLVGTALVH SLAVTEKRGS FKSWTVLLAI CAFSLSLLGT FLVRSGVLTS 300
  301 VHAFATDPTR GIFILAFLVT ITGGSLLLFA WRAPKIGLGG KFELVSRESM LLANNLLMMV 360
  361 AAGSILLGTL YPLFMDALEL GKISVGPPYF EAVFVPLMTP AVFLIGLGPL ARWKQASLPE 420
  421 LAVRLRWAFG VSAVTALVMP FIMGEWKLMV SFSLLMAFWV ITSVIVSVIH RLRSTGKQGL 480
  481 LAKLAAQSRS YYGMHAAHLG IAFFIIGVAL VGGYETEKDV RMEIGDTVEV GGYTFRFNGV 540
  541 KKAPGPNYMS DIGNVDVLRD GKKINVLEPE KRTYNASGMP MTEAAIDAGI LRDLYVALGE 600
  601 PLENGAWVVR VYHKPFVDWI WFGCMLMAFG GFLAITDRRY RLSSRKQRET VEIEERKVAK 660
  661 ASKAGRKATA PMIARSKKA