YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82702680, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANMSEKFII TEDMKPIHVG LLGAGTVGSG TFAVLKRNQE EITRRAGRSI VVRMIADREE  60
   61 EKARQIAGDD EVIVTRDANE VVMNPDIDIV VELIGGYTAA RDLILKAIEN GKHVITANKA 120
  121 LLASHGTEIF AAAQKKGVMV AFEAAVAGGI PIIKALREGL TANRIEWIAG IINGTSNFIL 180
  181 SEMRDKGLTF ETVLKQAQKL GYAEADPTFD IEGIDAAHKL TIMASIAFGI PMQFDKVYTE 240
  241 GITKLTREDI RYAEELGYRI KLLGITKRTS GGIELRVHPT LIPARRLIAN VEGVMNAIVV 300
  301 RGDAVGSTLY YGPGAGAEPT GSSVVADLVD VTRMHTADPK HRVPHLAFQP GRLSDTPILT 360
  361 MDEVETSYYL RLRVMDKPGA LADITRVLAD LGISIEAMMQ KEPSEGEDQV DIIMLTHLAV 420
  421 ERNVNDAIAR IKRLPITTGK VTRIRLEHLG SK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.64
Transmembrane Helix	16	35	0.68
Non-Cytoplasmic	36	452	0.95