YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pes-22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.94
Transmembrane Helix	73	94	0.87
Non-Cytoplasmic	95	112	0.90
Transmembrane Helix	113	135	0.90
Cytoplasmic	136	142	0.87
Transmembrane Helix	143	162	0.94
Non-Cytoplasmic	163	169	0.73
Transmembrane Helix	170	195	0.87
Cytoplasmic	196	202	0.87
Transmembrane Helix	203	226	0.90
Non-Cytoplasmic	227	232	0.83
Transmembrane Helix	233	251	0.96
Cytoplasmic	252	511	0.99
Transmembrane Helix	512	534	0.89
Non-Cytoplasmic	535	546	0.87
Transmembrane Helix	547	567	0.94
Cytoplasmic	568	577	0.84
Transmembrane Helix	578	600	0.89
Non-Cytoplasmic	601	606	0.71
Transmembrane Helix	607	627	0.93
Cytoplasmic	628	638	0.74
Transmembrane Helix	639	661	0.88
Non-Cytoplasmic	662	669	0.84
Transmembrane Helix	670	692	0.92
Cytoplasmic	693	777	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGPDPNRS SQPTSPTKSL KSERNGESNF EEDDQDIGSL NDGQLTNYSS QYSINMGVQQ  60
   61 VEPLLVPQAP DGGYGWVIVF AAFMSNLVVD GISTAFSEFK QSYKERYQES DGLTVFIGSL 120
  121 IIGTYLLVGP LVSALCNKYE QRYVVMAGGL ISGIAFMIAP ASPNIYVFML IYGVMGGLGF 180
  181 GMIYLPAIVV VGFYFDSKRA MATGISVAGS GVGTFLVPLI CQVCIANLGW QKTIWVLAVM 240
  241 IFSCVFYGYL YRPLPMVDLN EIRDQEMEPL RQALSKVEDD EDEAVESPHP NRSTSAASGA 300
  301 IEDEAVSQNP EVQRLRSILT EGDEGSETPK SDAHKVRSHT ATRSRKHTMT SNSGSQHDLK 360
  361 LSRGNLSSDN RLSRVSARDF NQSLSKLSKS GGASNLSIAM SGVDPKEFQR PMNRQDIFYG 420
  421 GSIQNLKEFK EEGTMAGYRA STLSIPRSVV GQAVSQLNLS RTGSRLGGPG IAEDEEEMIE 480
  481 PFVDDGCCKV LPLPMRNALS EMIDLNLLKN KTMMILCISN LLGMMGFYIP IMFLKDLSES 540
  541 MKLDMSLAMF LVPIFGVFNT IGRVFFGWLT DQKILSALTI NNLSLIVSGL LTLACPLLTS 600
  601 IAGQYFYAIV FGFIISAYIC LTSIVLADLM GLENLTNSFG LLVVARGIAS LVGPPFAGIV 660
  661 YDITGSYDTA FYFGGLVLLV AGLISATIPF VTKKDADTAD GMPQLQDQDN VSGKLSVLTE 720
  721 RSEEALTDYQ RTIQSMKQQH QLLQDLEEEK RKQKQNGVVE EGNEMDDNIP LKSLKNN