YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62645531, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEASSETVF WNESTREANR SAVKEFIFIG LSDSKELQIF LFVFFLVFYV GIVFGNLLIV  60
   61 MTVSYDSHLH SPMYFLLANL SFADLCLSSV TAPKTIADFF YTRKVISVKG CFTQIFLLHF 120
  121 FGGSEMVTLV AMAFDRYVAI CKPLSYTTIM CGNVCVGIVA TAWGIGFLHS VSQLAFAVSL 180
  181 PFCGPNKVDS FYCDLPKVLK LACADTYGLD IMVIANSGVL SVCSFVLLII SYGIILLTIQ 240
  241 RRPSDRSSKA LSTLTAHITV VLLFFGPCIF IYAWPFPIKS LDKFLAVFYS VVTPLLNPII 300
  301 YTLRNTEMKT AMRRLRQWNL KFLVKS

Type	Start	End	Confidence
Cytoplasmic	1	38	0.68
Transmembrane Helix	39	63	0.89
Non-Cytoplasmic	64	114	0.68
Transmembrane Helix	115	134	0.83
Cytoplasmic	135	145	0.73
Transmembrane Helix	146	167	0.90
Non-Cytoplasmic	168	216	0.91
Transmembrane Helix	217	239	0.90
Cytoplasmic	240	253	0.90
Transmembrane Helix	254	276	0.91
Non-Cytoplasmic	277	284	0.87
Transmembrane Helix	285	304	0.95
Cytoplasmic	305	326	0.94