YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62650354, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTIHLFRKP QRSFFGKLLQ EFRLVAADRR SWKILLFGAI NVLCTGFLLM WCSSTNSIAL  60
   61 TAYTYLTIFD LFSLITCLIS YWVMMRRPSA AYSFGFERLE VLAVFASTVL AQLGALFILK 120
  121 ESAERFLEQP EIHTGRLLVG TFVALSFNLF TMLSIRNKPF AYVSEAASTS WLQEHVADLS 180
  181 RSLCGIIPGL SSIFLPRMNP FVLIDLAGAL ALCITYMLIE INNYFAVDTA SAIAIALMTF 240
  241 GTMYPMSVYS GKVLLQTTPP HVIGQLDKLI REVSTLDGVL EVRNEHFWTL GFGSLAGSVH 300
  301 VRIRRDANEQ MVLAHVTNRL CTLVSTLTVQ IFKDDWIRPA LSSGPVAPNV LNFSDHHIIP 360
  361 MPLLKNNDER TPVTSTPAKP SSPPPEFAFN TPGKNVSPVI LLNTQTRPYG LGLNRGHTPY 420
  421 SSMFSQGLAF PGVGAGQGLR PTFPHIPSRY GINRMGQPRP

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	53	0.92
Non-Cytoplasmic	54	61	0.78
Transmembrane Helix	62	84	0.91
Cytoplasmic	85	98	0.88
Transmembrane Helix	99	119	0.89
Non-Cytoplasmic	120	131	0.90
Transmembrane Helix	132	153	0.87
Cytoplasmic	154	200	0.80
Transmembrane Helix	201	219	0.94
Non-Cytoplasmic	220	225	0.62
Transmembrane Helix	226	248	0.83
Cytoplasmic	249	460	0.76