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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109485460, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.80
Topology Confidence: 0.17
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLGPVLLQ VFWAGCVLTL QFPVPAAFTA NGTHLQHLAR DPTTGTLYVG ATNFLFQLSP  60
   61 GLQLEAVVST GPVNDSRDCL PPVIPDECPQ AQPTNNPNQL LLVSPEALVV CGSVHQGICE 120
  121 LRSLGQIRQL LLRPERPGDT QYVAANDPAV STVGLVAQGL AGEPLLFVGR GYTSRGVGGG 180
  181 IPPITTRALR PPDPQAAFSY EETAKLAVGR LSEYSHHFVS AFVRGTSAYF LFLRRDLKAP 240
  241 SRAFRAYVSR VCLQDQHYYS YVELPLACQG GRYGLIQAAA VATSKEAARG EILFAAFSSV 300
  301 APPTVDWPLS ASTGASGTSV LCAFPLDEVD QLANDTRDAC YTREGRAENG TKVADIAYDV 360
  361 LSDCAQLPVD TPDAFPCGSD HTPSPMVSCV PLEATPILEL PGVQLTAVAV TMEDGHTIAF 420
  421 LGDSQGQLHR VYLGPGRSAA PYSKQSIQPG SAVNRDLTFD GTFEHLYVAT QTTLVKVPVA 480
  481 PCAQHLDCDS CLAHRDPYCG WCVLLGRCSR RSECSRAQGP EQWLWSFQSE LGCLRVVAVS 540
  541 PANISRGERR EVFLSVPGLP SLWPEESYFC YFGDQQSPAL LTSSGVMCPS PDPSEAPVLQ 600
  601 RGADHISVNV ELRFGAVVIA NTSLSFYDCM AVTEFFPSAP CRACVSSRWG CNWCVWQQLC 660
  661 THKASCDSGP MVASQQSPLL PLIPPARDVL TPFPLTVPRA TATPTPNTFP AEPRAPSIAS 720
  721 DVLPGAKPSR LSLWGPWAGP GPILSPTSTE SPLHEKPLPP EPPTTPGTTV PAPADLGPLT 780
  781 TPEDLLASYP FPSDAAAVSP TEPGPETLPS MVALDQPPGT APATLFPGAT GSMKPVLDWL 840
  841 TKGGGELLEA EEWMGGDTPA FSTSTLLSGD GDSAEHEGPS APLILLSSLD YQYDTPGLWE 900
  901 LGEVNQRVSS CPCVENVQGS LLIPVHVKRE VQLRGRNLWL FQDGPRSSEC VLVLEGLEVA 960
  961 VEAQVECEPP PDTWCHIKCQ QHQFSYEASK PELQVGLFLR WAGGLRVDSA DGLHVVLYDC1020
 1021 SVGHGDCSRC QTAMPQYDCV WCEGEHPRCV AREACNEAET VATQCPAPLI HSVEPLTGPI1080
 1081 DGGTRVTIRG SNLGQHVQDV LGMVRVAGVP CAVDVGEYDV SSSLVCITGS SGEEVTGAVA1140
 1141 VEVPGRGHGV SEFSFAYQDP KVLSIFPVHG PRAGGTHLTL HGSKLLTGRL EDIRVVVGDQ1200
 1201 PCHLLLEQQS EQLHCETSPN PVPAELPVMV WFGATERRLQ HSQFKYTADP NITSVGPAKS1260
 1261 FFSGGREIWV RGQNLDVVQM PRIRVTVIPR VPQHGQGLGQ KHHVVPEKIE EPCLVNSSHL1320
 1321 IMCRSPALPG PPQDPWVQVE FILDNMVFDF ATLSPTPFSY EADPTLRSLN PEDPTTPFRH1380
 1381 KPGSVFSVEG ENLDLAMSKE EVVAMIGDGP CVVKTLTRHH LYCEPPVEQP LPHHHALREA1440
 1441 PDALPEFTVQ MGNLRFSLGH VQYDGESPVA FPVAAQVGLG VGVSLLALGV IVIVLIYRRK1500
 1501 SKQALRDYKK VQIQLENLES SVRDRCKKEF TDLMTEMTDL TSDLLGSGIP FLDYKVYAER1560
 1561 VFFPGHQESP LHRDLGVPDS RRPTVEQGLG QLSNLLNSKL FLTKFIHTLE SQRTFSARDR1620
 1621 AYVASLLTVA LHGKLEYFTD ILRTLLSDLV AQCVAKNPKL MLRRTETVVE KLLTNWMSIC1680
 1681 LYTFVRDSVG EPLYMLFRGI KHQVDKGPVD SVTGKAKYTL NDNRLLREDV EYRPLTLNAL1740
 1741 LAVGPGAGEA QSVPVKVLDC DTISQAKEKM LDQLYKGVPL AQRPDSRTLD VEWRSGVAGH1800
 1801 LILSDEDVTS ELEGLWRRLN TLQHYKVPDG ATVALVPCLT KHILRENQDY VPGERTPMLE1860
 1861 DVDEGGIRPW HLVKPSDEPE PPRPRRGSLR GGERERAKAI PEIYLTRLLS MKGTLQKFVD1920
 1921 DLFQVILSTS RPVPLAVKYF FDLLDEQAQQ HGISDQDTIH IWKTNSLPLR FWINIIKNPQ1980
 1981 FVFDVQTSDN MDAVLLVIAQ TFMDACTLAD HKLGRDSPIN KLLYARDIPR YKQMVERYYA2040
 2041 DIRQTVPASD QEMNSVLAEL SRNCSADLGA RVALHELYKY INKYYDQIIT ALEEDGTAQK2100
 2101 MQLGYRLQQI AAAVENKVTD L

YRC Informatics Platform - Version 3.0
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