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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62664531, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTERDSETT FDEDSQPNDE VVPYSDDETE DELEDQGPAV EPEQNRVNRE VEKKKETFRK  60
   61 DCTWQVKAND RKFHEQPHFM NTKFFCIKES KYASNAIKTY KYNALTFLPM NLFEQFKRAA 120
  121 NFYFLILLIL QAIPQISTLA WYTTLVPLLL VLGITAIKDL VDDVARHKMD KEINNRTCEV 180
  181 IKDGRFKIIK WKDIQVGDVI RLKKNDFIPA DILLLSSSEP NSLCYVETAE LDGETNLKFK 240
  241 MALEITDQYL QIEDNLATFD GFIECEEPNN RLDKFTGTLF WRNQSFPLDA DKILLRGCVI 300
  301 RNTDVCHGLV IFAGADTKIM KNSGKTRFKR TKIDYLMNYM VYTIIIVLIL VSAGLAIGHA 360
  361 YWEAQIGNYS WYLYDGENAT PSYRGFLNFW GYIIVLNTMV PISLYVSVEV IRLGQSHFIN 420
  421 WDLQMYYAEK DTPAKSRTTT LNEQLGQIHY IFSDKTGTLT QNIMTFKKCC INGTIYGDHR 480
  481 DASQHSHSKI ELVDFSWNEF ADGKLAFYDH YLIEQIQSGK EPEVRQFFFL LSICHTVMVD 540
  541 RIDGQINYQA ASPDEGALVN AARNFGFAFL ARTQNTITVS ELGTERTYSV LAILDFNSDR 600
  601 KRMSIIVRTP EGSIRLYCKG ADTVIYERLH RMNPMKQETQ DALDIFASET LRTLCLCYKE 660
  661 IEEKEFAEWN KKFMAASVAS SNRDEALDKV YEEIERDLIL LGATAIEDKL QDGVPETISK 720
  721 LAKADIKIWV LTGDKKETAE NIGFACELLT EDTTICYGED INSLLHTRME NQRNRGGVSA 780
  781 KFAPPAYEPF FPPGENRALI ITGSWLNEIL LEKKTKRSKI LKLKFPRTEE ERRMRSQSRR 840
  841 RLEEKKEQRQ KNFVDLACEC SAVICCRVTP KQKAMVVDLV KRYKKAITLA IGDGANDVNM 900
  901 IKTAHIGVGI SGQEGMQAVM SSDYSFAQFR YLQRLLLVHG RWSYIRMCKF LRYFFYKNFA 960
  961 FTLVHFWYSF FNGYSAQTAY EDWFITLYNV LYSSLPVLLM GLLDQDVSDK LSLRFPGLYV1020
 1021 VGQRDLLFNY KKFFVSLLHG VLTSMVLFFI PFGAYLQTVG QDGEAPSDYQ SFAVTMASAL1080
 1081 VITVNFQIGL DTSYWTFVNA FSIFGSIALY FGIMFDFHSA GIHVLFPSAF QFTGTASNAL1140
 1141 RQPYIWLTII LTVAVCLLPV VAIRFLSMTI WPSESDKIQK HRKRLKAEEQ WKRRQSVFRR1200
 1201 GASSRRSAYA FSHQRGYADL ISSGRSIRKK RSPLDAIIAD GTAEYRRTVE S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle