YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109512747, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.93
Transmembrane Helix	24	44	0.90
Non-Cytoplasmic	45	72	0.97
Transmembrane Helix	73	92	0.94
Cytoplasmic	93	102	0.79
Transmembrane Helix	103	122	0.91
Non-Cytoplasmic	123	182	0.94
Transmembrane Helix	183	200	0.87
Cytoplasmic	201	211	0.79
Transmembrane Helix	212	234	0.91
Non-Cytoplasmic	235	252	0.75
Transmembrane Helix	253	272	0.87
Cytoplasmic	273	283	0.72
Transmembrane Helix	284	306	0.78
Non-Cytoplasmic	307	324	0.79
Transmembrane Helix	325	349	0.90
Cytoplasmic	350	357	0.76
Transmembrane Helix	358	377	0.69
Non-Cytoplasmic	378	378	0.51
Transmembrane Helix	379	400	0.77
Cytoplasmic	401	416	0.60
Transmembrane Helix	417	437	0.66
Non-Cytoplasmic	438	444	0.65
Transmembrane Helix	445	467	0.82
Cytoplasmic	468	480	0.81
Transmembrane Helix	481	500	0.90
Non-Cytoplasmic	501	511	0.70
Transmembrane Helix	512	534	0.84
Cytoplasmic	535	702	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVARRGWRL APVRRGVCGP RARLLMRPLW LLFAVSFFGW AGALDSSGGT TRAMDEEIVS  60
   61 EKQAEESHRQ DSANLLIFIL LLTLTILTIW LFKHRRARFL HETGLAMIYG LLVGLVLRYG 120
  121 IHVPSDVNNV TLSCEVQSSP TTLLVNVSGK FYEYTLKGEI SSHELNNVQD NEMLRKVTFD 180
  181 PEVFFNILLP PIIFYAGYSL KRRHFFRNLG SILAYAFLGT AISCFVIGSI MYGCVTLMKV 240
  241 TGQLAGDFYF TDCLLFGAIV SATDPVTVLA IFHELQVDVE LYALLFGESV LNDAVAIVLS 300
  301 SSIVAYQPAG DNSHTFDVTA MFKSIGIFLG IFSGSFAMGA ATGVVTALVT KFTKLREFQL 360
  361 LETGLFFLMS WSTFLLAEAW GFTGVVAVLF CGITQAHYTY NNLSTESQHR TKQLFELLNF 420
  421 LAENFIFSYM GLTLFTFQNH VFNPTFVVGA FIAIFLGRAA NIYPLSLLLN LGRRSKIGSN 480
  481 FQHMMMFAGL RGAMAFALAI RDTATYARQM MFSTTLLIVF FTVWVFGGGT TAMLSCLHIR 540
  541 VGVDSDQEHL GVPDNERRTT KAESAWLFRM WYNFDHNYLK PLLTHSGPPL TTTLPACCGP 600
  601 IARCLTSPQA YENQEQLKDD DSDLILNDGD ISLTYGDSTV NTESATASAP RRFMGTSTED 660
  661 ALDRELTFGD HELVIRGTRL VLPMDDSEPA LNSLDDTRHS PA