YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83814204, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLPPWFEQ LSPVLQSLLA GGFTWGVTAL GASVVFFTRR VNQRLLDAMM GFAAGVMIAA  60
   61 SFWSLLAPSI DMAAAQGITE WVPPTIGFLL GGVFLRLSDA LLPHLHPGAR RADAEGPTTS 120
  121 WRRATLLVLA ITLHNIPEGL AVGVTFGAAA IELEVATGAT LAGALALALG IGLQNFPEGI 180
  181 AVAMPLRGEG LSRGRSFWYG QLSGIVEPLS AVAGALAVVG VRPLLPYALS FAAGAMIYVV 240
  241 VEELIPESQR HGNTDLATLG VMGGFAVMMV LDVALG

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.91
Transmembrane Helix	17	37	0.95
Cytoplasmic	38	47	0.78
Transmembrane Helix	48	67	0.94
Non-Cytoplasmic	68	80	0.80
Transmembrane Helix	81	103	0.82
Cytoplasmic	104	125	0.85
Transmembrane Helix	126	149	0.83
Non-Cytoplasmic	150	155	0.78
Transmembrane Helix	156	176	0.92
Cytoplasmic	177	196	0.90
Transmembrane Helix	197	218	0.94
Non-Cytoplasmic	219	223	0.80
Transmembrane Helix	224	241	0.91
Cytoplasmic	242	253	0.71
Transmembrane Helix	254	275	0.88
Non-Cytoplasmic	276	276	0.93