YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83756959, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGGPAVQA SIGPFIPSFP LVLFTTPHPP MLSIQRILFP TDFSDGARRA FPQAAHLADW  60
   61 HDAGLHILNV TGRHRHDHEE TTANFPIATD TLTKWLRRPE KSVRGANWPD LEALPITQEQ 120
  121 VESAEPAERI LAYAEDEAID LIVMGTHGRR GVDRMLFGSV TEEVVRKAPC PTLTVRADAD 180
  181 VAPDQAVRRV LAPVDFSDAS RSAVRHAKEI ALTYGAEIDL LHVVEEPFYP PAYGLGETGF 240
  241 PTDKVIGSVE DELADLARSE VGYEHVMIEA RTGEPSREIL NYIDENEVDL TVIASHGRTG 300
  301 LDRMLIGSVA ERVVRQSPTP VFVAKPDRAA LVSSDAAEAA SARD

Type	Start	End	Confidence
Cytoplasmic	1	9	0.47
Transmembrane Helix	10	28	0.55
Non-Cytoplasmic	29	344	0.96