YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85860780, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.96
Transmembrane Helix	39	58	0.95
Non-Cytoplasmic	59	66	0.78
Transmembrane Helix	67	90	0.86
Cytoplasmic	91	106	0.93
Transmembrane Helix	107	130	0.87
Non-Cytoplasmic	131	135	0.83
Transmembrane Helix	136	158	0.89
Cytoplasmic	159	168	0.82
Transmembrane Helix	169	190	0.88
Non-Cytoplasmic	191	212	0.80
Transmembrane Helix	213	233	0.91
Cytoplasmic	234	244	0.98
Transmembrane Helix	245	267	0.85
Non-Cytoplasmic	268	281	0.80
Transmembrane Helix	282	302	0.92
Cytoplasmic	303	313	0.85
Transmembrane Helix	314	336	0.88
Non-Cytoplasmic	337	341	0.81
Transmembrane Helix	342	364	0.90
Cytoplasmic	365	387	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMIFASMWC ETVICSGRRR SGKKMAQAEE KRLSFLDRFL TLWIFLAMFV GVMGGYLYPG  60
   61 IRDVINIFQV GTTNIPIAIG LILMMYPPLA KVKYEKLGQV FTNGKVLALS LVQNWIIGPI 120
  121 LMFLLAITFL SGYHEYMVGL ILIGLARCIA MVIVWNDLAE GDREYCAGLV AFNSIFQVLF 180
  181 FSVYAYIFIT ILPTWVGLKG AVVDISIGQI AESVFIYLGI PFIAGIISRF VGLKTKGILW 240
  241 YEEKFIPRIS PITLIALLFT ILVMFSLKGE YIVELPMDVV RVAVPLFIYF VVMFFVSFFL 300
  301 SMKVRATYEE STTLSFTAAS NNFELAIAVA IAVFGINSGE AFACVIGPLL EVPVLISLVN 360
  361 VALWFKKKYF PHTKATPTGV CHVTCEN