YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68356878, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTNWSDFE SFFNETYSEE TYEGSIVTAE VILCKKADVI RFSAAFLPAF YYINFLLSLL  60
   61 GNGLVLCIIY KFEKLSTVTN IFLLNLVISD LIFASSLPFW AVYHKSEWIF GKNLCKFVGS 120
  121 CYSVGFNSSI LFLTLMTFDR YLAVVHSIAA AQSRRMAYAF GSSAAVWVVS IVASIKDIVL 180
  181 YDVMKTEDGL LCEMTGYNQT FLTKWELIGY YQQFFLFFMV PLIIVLYCYV RITIRIMYTR 240
  241 LMEKCRAVKL IFIIVFTFFI CWTPYNVVIL LKAIKTYFKV QNDCSNALDY ALYVTRNFAY 300
  301 LYCCISPVFY TFLGKKFQSH FLKLLSKRIP CLKIDAMWST QSSKNTSFRS PNTDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.92
Transmembrane Helix	49	70	0.92
Cytoplasmic	71	80	0.78
Transmembrane Helix	81	102	0.93
Non-Cytoplasmic	103	117	0.83
Transmembrane Helix	118	138	0.82
Cytoplasmic	139	155	0.81
Transmembrane Helix	156	175	0.92
Non-Cytoplasmic	176	209	0.92
Transmembrane Helix	210	230	0.91
Cytoplasmic	231	249	0.81
Transmembrane Helix	250	269	0.92
Non-Cytoplasmic	270	297	0.89
Transmembrane Helix	298	314	0.88
Cytoplasmic	315	355	0.87