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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68368099
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQLTWSAVT LMYLFVSNGA CARNVSLKCV DDTMGFLMEL QKETPSKFAV IMYDAFGKIG  60
   61 SDVEGGNVNR PGSLRECLSV EGPGFRGQYC QVFLKQDKVE YFVGVCVPDS CTDSEVQTLV 120
  121 IHASIFVALI KRKQMREVAP VVGLAQTSNS KQYGTVLTNG SANQNKECSP DLDTTQTKTQ 180
  181 NAESKQQSLS KTVVSWLQGF SVQNCSQGLL DTEGSGRSYS SLNGIRILSL FWIISGHTVH 240
  241 FSAWSHLDNE KRWKEMVENN PLYVLTFSGP VYLAVDSFLV LGGLLSAKSL LGTIRRSDNT 300
  301 LSVGLVVNYL FKRFKRIQPL HLFIVCLVIS LFSVVPRGVF WFFAEDQVLS CKKYWWSNLL 360
  361 LINNLLTITD ICAPWTWYLS IDFQFYATTP LLIFLYRMNK CALVVVSVVL LMLSSVTGAL 420
  421 ITSFLHLPVH QPTTLAYESY FQYYYNKPYT RYGPYLLGVL AGIYMTTKKE ALIKHQWQAV 480
  481 IGWLCSLSVM ALLVGLAYVL RDVPPHLSIP HAIYQGIHRS LWALALIWII LACEEGYGGF 540
  541 VDTFLSLSLW APLSNISFAC YLIHPIIIIL YNGKQEITMH YTDFNFFYLF LGHLVLSIFI 600
  601 GYVLTVLIEK TDVYAVFQRE EMTAKRVDMA APDNLLFLDS DAVNSSPASV PIEQNEPTHV 660
  661 LDNQTDDSLR SMPDPHTNTA LESTGLMPVP CQDETLETHS QHNEGENESS LVSTQHMDHT 720
  721 RLTEMTINDE KSNNWDFDIS GVKENDNSTN LNPDLIHHAG TDSVMERNLN DKQTDLNHKD 780
  781 ETFGSLMSSE VLLLKENRQQ EMSQDTNLHQ CSSSESTGIE YSQTANDAIS DAMNSEQSPD 840
  841 QPFSIASNDT DKTTSECSVQ TCWDTVESAA TSKTQPELHD DVKDVMCESF TTSQTLNIDY 900
  901 LSTDISVCLA DLPETDSLNI LTPASTLLGI LGKNNNVLKT ADVPINDSEM VQSINKDLAS 960
  961 PNADISKTVF TQMDQNLLHV TDHNVKVLES NRADTVVDQY VFSENIGQEV SQASSHDEDL1020
 1021 NSSVQSHDQQ LSTANSEIEE TSSEFHTQTC QDIHEGVIIA EEAMNGHNTL PEMHDIADVT1080
 1081 TSQTPIMKDP MIDEPSYLPD LHKADTPNVI TTASTLSDTL ETDDSIFETA DVSVSDCELI1140
 1141 QTVTLKTVTT YETLLMMHDV GEDLTCCDFT TSAIEEPETS HPLSLDDLHE SNTPNIPPHA1200
 1201 SALLDSLGMN KNFLETADVP VSDCEVIQTV TFETVTTYET FPVMHDIAED LTCCDFTTSE1260
 1261 TPKIEEPETS HSLSLDDLNE ANTPNILPHA SALLESLGMN NNFLEAADMP VSDREIIHPV1320
 1321 NKDLDSSSVE ICTVVLTQTD PKEVQDSDLD EKETESNRID DSIDGMIDTK FSLDVSKLQP1380
 1381 VCSNDLSGTV IHSESLFSQS IPDTPQIGEK YKNDLLQVIS PPTPVTNEDL GNCSEEIDDA1440
 1441 CLKFTGTERD VEGDSELWLE PSQFLAGEED EGAIFDKWGR SCSSSPPTTH PDNTKASDYT1500
 1501 WRENISIDHN AEDWELTFPP VERWSSSDSW ASALSDWFQA VNTYPEDSFK SASTGSKLGM1560
 1561 AIQDNILEQR TSSDNANNDE QTCLSLNLMQ PDEPGQALER GLVKSDNTNG TVFKQGDKER1620
 1621 LASCLDMDKD TTTMESQMSL LETSTPESHK ADNNAVMETF NASLTHEFNA KLHGSLDISG1680
 1681 KLLSAKREGN VLVEVTGGKV SQLGLVFEEE RQSIFTSPSS SAYTRDKNLT GCVSNEERCH1740
 1741 SSDVHLCICP SQSDSHVSSK AGHAEGNGSF LHSNIGNCTV KPYVEENIPQ FIMPFAPICT1800
 1801 GNTFLHRSFL KEDRSQADLD LPDKKIINKI NLKSNKKSSS SDDSSEDNFH TCPDQSLSSS1860
 1861 SGDSDDPSIT DSGRKPAYSD TCDIGKELSK LLLLTGEHFM VSEDKRIAYV TLDLDESQHF1920
 1921 GRFSLPNCEK QSKPDNMPHK TSKTSSDGKM RSKHKEKPDD KQQHGIQASK KQDPQPQSQV1980
 1981 KNEGAGCEDC PVAVIETIVI TEKIIPKTQG KKKKKHVQHG TPKPENDAPT DVRSESRQKN2040
 2041 VNGKAENLEL KVASNSLNKP VAQPSGKTDI TKKDSAQKVM SVRPKVEPSM AKMDPAGVNA2100
 2101 TQKSSPIKLK ADTFNTAKME NKTCTTDSLS TCLPSMLNDD IKRRRIADDL SRAVPIRTRP2160
 2161 QLPAIFRQAR KDGEDVTRRA YSEVVKQKNS TPKEVVVPRV VSEIQADPVP ADPQNISLWC2220
 2221 QFSPIPPEAT IKWTKEAAVL SEINKVEKED GRFTLTIIKA CSKDLGFYKC SLIVANISVS2280
 2281 TSEYHLTSEA EPRVMEGDEE NIQCSPLLFK EDFLSDQYFG KNQPASILTE KVHFGEGMHR2340
 2341 KAFRTTLTEG NLPRFRPGHP CVLKVHNSIS YGTKNNEELV QKNYSLAVEE CHVQNTAREY2400
 2401 IKAYNSVAKS AESFGDLPE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle