YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68369440
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	128	0.97
Transmembrane Helix	129	151	0.87
Non-Cytoplasmic	152	164	0.76
Transmembrane Helix	165	186	0.86
Cytoplasmic	187	220	0.89
Transmembrane Helix	221	243	0.93
Non-Cytoplasmic	244	251	0.87
Transmembrane Helix	252	280	0.83
Cytoplasmic	281	291	0.86
Transmembrane Helix	292	316	0.85
Non-Cytoplasmic	317	324	0.86
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	354	0.91
Transmembrane Helix	355	376	0.91
Non-Cytoplasmic	377	384	0.83
Transmembrane Helix	385	405	0.79
Cytoplasmic	406	447	0.78
Transmembrane Helix	448	468	0.81
Non-Cytoplasmic	469	475	0.64
Transmembrane Helix	476	499	0.90
Cytoplasmic	500	519	0.64
Transmembrane Helix	520	542	0.92
Non-Cytoplasmic	543	552	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLWLKDQDK LSDMSTGTER IEMKKEGVPP AYHHSNGSVH PVILPDSPEE VPQTPGEYEL  60
   61 TEVTSLPDCG DQENERPDMV VLDCRANAKG QREEDALLEN ASQSNESDDT STDQSPVPPA 120
  121 PLKETSFSIG LQVLIPFLLA GFGTVAAGMV LDIVQVRLVG YMWGLHWTVF TEVTEVFILV 180
  181 PALLGLKGNL EMTLASRLST AANIGQMDTA KDMWKMIMGN LALIQATVVG FLASIAAVIF 240
  241 GWIPEGNFRM GHAILLCASS VATAFIASLA LGLIMIGVII ASRKVGINPD NVATPIAASL 300
  301 GDLITLSLLA GISTGLYKEL EFNNYANPMV CAFFVALTPI WVLIARRIPS TREVLYSGWE 360
  361 PVIIAMAISS VGGLILDKTV SNPNFAGMAV FTPVINGVGG NLVAVQASRI STYLHMNALP 420
  421 IVEPNPAPRK CPTPWGTFFG SGVNSRSAKV LFLLVAPGHL VFLYTINSMR GGHTTLTYIF 480
  481 IAFYLAAALL QVIILLYLAD WMVNWMWRRG MDPDNFSIPY LTALGDLLGT GFLALCFHIL 540
  541 WLIGDRDTDV GD