YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68387222
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.68
Transmembrane Helix	88	106	0.61
Non-Cytoplasmic	107	242	0.91
Transmembrane Helix	243	263	0.91
Cytoplasmic	264	274	0.75
Transmembrane Helix	275	292	0.93
Non-Cytoplasmic	293	298	0.76
Transmembrane Helix	299	320	0.92
Cytoplasmic	321	675	0.90
Transmembrane Helix	676	699	0.88
Non-Cytoplasmic	700	785	0.62
Transmembrane Helix	786	801	0.31
Cytoplasmic	802	811	0.59
Transmembrane Helix	812	834	0.86
Non-Cytoplasmic	835	842	0.52
Transmembrane Helix	843	863	0.83
Cytoplasmic	864	871	0.75
Transmembrane Helix	872	893	0.90
Non-Cytoplasmic	894	901	0.73
Transmembrane Helix	902	922	0.93
Cytoplasmic	923	942	0.85
Transmembrane Helix	943	963	0.92
Non-Cytoplasmic	964	981	0.79
Transmembrane Helix	982	1002	0.94
Cytoplasmic	1003	1009	0.76
Transmembrane Helix	1010	1030	0.93
Non-Cytoplasmic	1031	1040	0.62
Transmembrane Helix	1041	1062	0.87
Cytoplasmic	1063	1069	0.76
Transmembrane Helix	1070	1092	0.87
Non-Cytoplasmic	1093	1100	0.67
Transmembrane Helix	1101	1122	0.92
Cytoplasmic	1123	1166	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFPRVPRFC FLPPPKCASY VRHGKAKSCP TNGRETWARG ALVFRAIEYK NPRNESEEIL  60
   61 SIVQKVMEIV QNHTGYGRIY PLTSKGKVAC VLYAMVGIPL MLLVISDVGD LLAVLLSKAY 120
  121 TRLNLFFRRW IGHQSWRLQS HEKTSALPQV QADTDGTYKF NQDVVVLETT NNQQVIQTRS 180
  181 SIRRGSFQLR NNKEIFDRII VRESFRIKGT LSKSCSCPEL DRVPTPKDEL FNDIGQEMEQ 240
  241 LDVPLLVILL MVFAYMVICS QILKCWEKQM DHSDAFYFTF ITLTTIGFGD IVPEHPKFFM 300
  301 VTFLFIITGM AIMSMAFKLG QSQIVCFYRR CIKSLSMGKC KDVMTGRKVD DVDRVMAANS 360
  361 NNQNNPKNRN RENKVGNGSE TLRVENSGEE EEEDDMDIGW TQIEGRYGKK ASRKRKKGKE 420
  421 DASESSSLAS EEEGVGEKAK LGFRIILRFK EETGVSGINP MMLTHELKKQ VGEIAFAKVL 480
  481 QDGALMIVCK NEEQKNKAMK VKTVGKKVVT SSKIIGQNSW IFGVIKGVPI GVTMEELKKN 540
  541 LDGGKVIDAV RLKMNREGRR MDSLSVRIKF EGREMPDKVR MGFISYPVIE YNAPPMRCYN 600
  601 CQSVTSNTSQ ATKTLRIQRA FHPGSDSKAQ CKCAYKVISP SLSGSWIFIF KMGLFDALRD 660
  661 FSLLTWLREE RQSRRLILLI VFIALLLDNM LLTVVVPIIP SYLYTVDDEA AQMVKNHSMT 720
  721 PLSPSSTFQS IVSLYDNTTR VTGFSPQMST AGPMSLAPTF VSPQNQSDCP KADDQLLNEN 780
  781 VKVGLLFASK ATVQLITNPF IGPLTNRIGY QIPMFAGFCI MFVSTIMFAF SSSYTLLFLA 840
  841 RSLQGVGSSC SSVAGMGMLA SVYTDDEERG NAIGIALGGL AMGVLVGPPF GSVMYEFVGK 900
  901 TAPFLILAVL AVLDGALQLF VLQPSKVEPE SQKGTSLITL MKDPYILIAA GSICFANMAI 960
  961 AMLEPALPIW MMETMCPRKW QLGIAFVPAS ISYLIGTNIF AVLAHKMGRW LCSLIGMLLV1020
 1021 GISILCVPLA KDIYGLIVPN FGVGFAIGMV DSSMMPIMGY LVDLRHVSVY GSVYAIADVA1080
 1081 FCMGFALGPS AGGAIARSIG FPWLMTIIGL VDIMFAPLCF FLRNPPANEE KMAILMDSNC1140
 1141 SMKTRSYSTQ GSSYQMGDDF DPESPE