YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68433668
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLQDLSQS ELQDLLDNLE RVESMALESD EIQNIQLERE MALAANRSLA EQNLDMKPRI  60
   61 ENDRARLVEK YTELEAVREK YKQHCVLRDS IMGQVSPEGL LSRLQAEGAS TEAESEALAD 120
  121 EFLEGSISLD SFLERFLSLR SLAHTRRVRI EKLQEILSQK SKGIGDATIA SQPCASQDAG 180
  181 SSSPWQQQQP QQSSKINAPS NASSSALPYS PYPVAPPSAS TAGSTNPSTA FQPYPSQGAP 240
  241 FPQATGFPAP RPAFGPPACP YPTQPQFPAP PFGRVGPTPA QYPAPYPQYG VYNYPTGPHA 300
  301 PSTQSPPGLG ITDLNTTNNS ENNSANVSKT IPTTLMVPQI TCPKTVERIT ETVMAWLKVK 360
  361 GKSPCEGRVY VYSATLGEKP LCCSSHKRTS LLRGLCKDMR CGDLNSVTNF NEYNSGIELT 420
  421 SNMTLNITQC SGLSISCTDS LGNELVAYKA VTGILIFILV FILIQFSRPT IKVIRKRCLE 480
  481 RLTVNTSREP SSNRNSDYDS YSYN

Type	Start	End	Confidence
Non-Cytoplasmic	1	444	0.98
Transmembrane Helix	445	467	0.89
Cytoplasmic	468	504	0.94