YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62089412
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTASGRESQA PGRRMVAERS PARSPGSWLF PGLWLLVLSG PGGLLRAQEQ PSCRRAFDLY  60
   61 FVLDKSGSVA NNWIEIYNFV QQLAERFVSP EMRLSFIVFS SQATIILPLT GDRGKISKGL 120
  121 EDLKRVSPVG ETYIHEGLKL ANEQIQKAGG LKTSSIIIAL TDGKLDGLVP SYAEKEAKIS 180
  181 RSLGASVYCV GVLDFEQAQL ERIADSKEQV FPVKGGFQAL KGIINSILAQ SCTEILELQP 240
  241 SSVCVGEEFQ IVLSGRGFML GSRNGSVLCT YTVNETYTTS VKPVSVQLNS MLCPAPILNK 300
  301 AGETLDVSVS FNGGKSVISG SLIVTATECS NGIAAIIVIL VLLLLLGIGL MWWFWPLCCK 360
  361 VVIKDPPPPP PPAPKEEEEE PLPTKKWPTV DASYYGGRGV GGIKRMEVRW GDKGSTEEGA 420
  421 RLEKAKNAVV KIPEETEEPI RPRPPRPKPT HQPPQTKWYT PIKGRLDALW ALLRRQYDRV 480
  481 SLMRPQEGDE GRCINFSRVP SQ

Type	Start	End	Confidence
Cytoplasmic	1	23	0.82
Transmembrane Helix	24	45	0.78
Non-Cytoplasmic	46	331	0.93
Transmembrane Helix	332	355	0.93
Cytoplasmic	356	502	0.94