YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86360217, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	40	0.80
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	448	0.96
Transmembrane Helix	449	470	0.91
Cytoplasmic	471	480	0.70
Transmembrane Helix	481	514	0.70
Non-Cytoplasmic	515	526	0.71
Transmembrane Helix	527	549	0.88
Cytoplasmic	550	557	0.69
Transmembrane Helix	558	582	0.81
Non-Cytoplasmic	583	595	0.72
Transmembrane Helix	596	617	0.89
Cytoplasmic	618	645	0.74
Transmembrane Helix	646	667	0.90
Non-Cytoplasmic	668	674	0.72
Transmembrane Helix	675	695	0.88
Cytoplasmic	696	700	0.66
Transmembrane Helix	701	721	0.85
Non-Cytoplasmic	722	725	0.71
Transmembrane Helix	726	744	0.86
Cytoplasmic	745	749	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRPARYRRF PAATSRRWRL PNGCHSILPF CCLTIPPAAS TSRPSGKSIS CSAPSPPKGG  60
   61 SSSLPAPIRR NSCISAIVSW FCAKAASRRC CRRMTSAKER SSVRPWASPP RRRERRHEHQ 120
  121 FLIPTLSLDP DAPQSRPLRP LSCRRGLSHP LCDALPGHPF DRRLLEIHAE LVPARTRHHG 180
  181 PGAAHAEWRH HAGDRSARQP RRGHRRDDDG RGARRVGRHS RGRRRRPCGR RRHRRHRHLS 240
  241 EASCDHRHAR RLLHHQRCRT HSAAAAGWHR SRLAVDGAGR PHGRCLSDAR GDPGALESLP 300
  301 GDAARSRHLC GRRQPGRGVP FRRSRRTGEG RGFRALRSAG CADRPLRRRA DRLRRSCHRH 360
  361 ALHAKLDRCR RARRRRLPRR QGHDARCDLR QPAALGHDQR HVLPRLPAGG AICCSRLDHR 420
  421 RRGCRSGTSR RVEGKTLNIV RSAFRNPPLL TFLLVALVWI VASFTLRGFG AYGHLRYLLE 480
  481 LAAVIGIVAA GQTLVILMGG IDLSVGAVIT VTAILLPLIS PAWDPTGLAG IAAALAIATG 540
  541 IGLMNGAGAT YLRVPPIIMT LAMATFLQGL LIIVAGGSAV TVSNPAVIML GQARPLGIPS 600
  601 GIILWVAVAV VVLLLVHRMP IGARFLALGA NPLAARLSGV SVTRNTVIAH TLSGFFAGLT 660
  661 GILVLGMNRQ GYVGIGDPYL LTSIAAVVLG GTSILGGRGT YAGTIPGAIL LVTATALITV 720
  721 VNASPGWRSI MFGTLILALL LVSGREARR