YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86826466, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVPCQVLR VAILLSYCSI LCNYKAIEKP SHQTYGGSWK FLTFIDLVIQ AVFFGICVLT  60
   61 DLSSLLTRGS GNQEQERQLK KLISLRDWML AVLAFPVGVF VVAVFWIIYA YDREMIYPKL 120
  121 LDNFIPGWLN HGMHTTVLPF ILIEMRTSHH AYPSRSSGLA AICTFSVGYI LWVCWVHHVT 180
  181 GMWVYPFLEH IGPGARILFF GSTTILMNFL YLLGEVLNSY IWDTQRSMEE DKEKPKLE

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	27	0.65
Non-Cytoplasmic	28	46	0.83
Transmembrane Helix	47	67	0.88
Cytoplasmic	68	87	0.92
Transmembrane Helix	88	110	0.94
Non-Cytoplasmic	111	126	0.89
Transmembrane Helix	127	145	0.87
Cytoplasmic	146	157	0.77
Transmembrane Helix	158	179	0.91
Non-Cytoplasmic	180	196	0.82
Transmembrane Helix	197	217	0.87
Cytoplasmic	218	238	0.91