YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83406095, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKMLTAAVS RVLSGVTQKP ASRVLVASCK YSNNATFEIK KCDLYRLEEG PPVTTVLTRE  60
   61 DGLKYYKMMQ TIRRMELKAD QLYKQKFIRG FCHLCDGQEA CCVGLEAGIN PTDHVITSYR 120
  121 AHGLSYTRGL TVRSILAELT GRRAGCAKGK GGSMHMYAKN FYGGNGIVGA QGPLGAGVAL 180
  181 ACKYKGNNEV CLTLYGDGAA NQGQISEAYN MAALWNLPCI FICENNRYGM GTSVDRAAAS 240
  241 TDYYKRGNFI PGLRVDGMDI LCVREATKFA ADYCRSGKGP ILMELLTYRY HGHSMSDPGI 300
  301 SYRTREEIQS VRSKSDPIML LKDKMVNNQL ASVEELKEID VEVRKEIDDA AQFAMTDPEP 360
  361 PLEELGHHIY SSNPPFDIRG ANQWIKFQSV S

Type	Start	End	Confidence
Signal Peptide	1	18	0.73
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	391	0.99