YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74193111
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGWFYLSC MVLGSLGSMC ILFTAYWMQY WRGGFAWDGT VLMFNWHPVL MVAGMVVLYG  60
   61 AASLVYRLPS SWVGPRLPWK VLHAALHLLA FTCTVVGLIA VFRFHNHSRI AHLYSLHSWL 120
  121 GITTVVLFAC QWFLGFAVFL LPWASQWLRS LLKPLHVFFG ACILSLSITS VISGINEKLF 180
  181 FVLKNATKPY SSLPGEAVFA NSTGLLVVAF GLLVLYVLLA SSWKRPDPGA LTDRQDGTCG 240
  241 WRLSPSALMW SPGWNVRMAE DFV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	28	0.94
Non-Cytoplasmic	29	45	0.89
Transmembrane Helix	46	68	0.89
Cytoplasmic	69	82	0.85
Transmembrane Helix	83	104	0.91
Non-Cytoplasmic	105	118	0.87
Transmembrane Helix	119	143	0.88
Cytoplasmic	144	154	0.83
Transmembrane Helix	155	175	0.94
Non-Cytoplasmic	176	196	0.93
Transmembrane Helix	197	219	0.91
Cytoplasmic	220	263	0.89