YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70734270, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	27	0.93
Non-Cytoplasmic	28	31	0.70
Transmembrane Helix	32	54	0.90
Cytoplasmic	55	63	0.62
Transmembrane Helix	64	83	0.78
Non-Cytoplasmic	84	103	0.92
Transmembrane Helix	104	129	0.87
Cytoplasmic	130	138	0.76
Transmembrane Helix	139	161	0.91
Non-Cytoplasmic	162	181	0.86
Transmembrane Helix	182	203	0.90
Cytoplasmic	204	231	0.91
Transmembrane Helix	232	252	0.93
Non-Cytoplasmic	253	264	0.81
Transmembrane Helix	265	289	0.88
Cytoplasmic	290	304	0.86
Transmembrane Helix	305	327	0.70
Non-Cytoplasmic	328	338	0.68
Transmembrane Helix	339	357	0.57
Cytoplasmic	358	358	0.36
Transmembrane Helix	359	384	0.73
Non-Cytoplasmic	385	388	0.51
Transmembrane Helix	389	412	0.74
Cytoplasmic	413	423	0.55
Transmembrane Helix	424	446	0.88
Non-Cytoplasmic	447	449	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPATGSWLL GYAAVAIIAL IVLIARYRLN PFIVITLVSV GLALMAGMPP SGVVSAYEAG  60
   61 VGKTLGHIAL VVALGTMLGK LMAESGGAEQ VARTLIDRFG ERNAHWAMVC IAFLVGLPLF 120
  121 FEVGFVLLVP IAFTVARRVG VSLLMVGLPM VAGLSVVHAL VPPHPGAMLA VQAYQASVGQ 180
  181 TLVYALLIGV PTAIIAGPLY ARFIVPHIHL PAQNPLERQF IAREPRLRLP SFRLTLATIL 240
  241 LPVVLMLLGG WANLLAEPGT GLNQFLLFIG NSVIALLVAT LVSFWTLGLA QGMNRESILK 300
  301 FTNECLAPTA SITLLVGAGG GLNRILIDSG VTEQIVGLAH EFQLSPLWMG WLFAVLMRVA 360
  361 TGSATVALTT ASGVVAPVAV GLGYPHPELL VIATGAGSVI LSHVNDGGFW LVKEYFNMTV 420
  421 IQTFKTWTVL ETLISVIAFG LTLVLAEFL