YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70734353, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.61
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	249	0.70
Transmembrane Helix	250	273	0.87
Cytoplasmic	274	289	0.56
Transmembrane Helix	290	308	0.82
Non-Cytoplasmic	309	319	0.59
Transmembrane Helix	320	343	0.89
Cytoplasmic	344	362	0.64
Transmembrane Helix	363	383	0.94
Non-Cytoplasmic	384	399	0.60
Transmembrane Helix	400	422	0.75
Cytoplasmic	423	426	0.38
Transmembrane Helix	427	442	0.36
Non-Cytoplasmic	443	443	0.29
Transmembrane Helix	444	465	0.84
Cytoplasmic	466	475	0.58
Transmembrane Helix	476	497	0.75
Non-Cytoplasmic	498	502	0.46
Transmembrane Helix	503	523	0.88
Cytoplasmic	524	542	0.41
Transmembrane Helix	543	565	0.91
Non-Cytoplasmic	566	581	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAIVTACP NGMVTSVLCA RLLDAAAQRQ GWSTSVEVHD EAHPERQLSA ATIEAAEWVL  60
   61 VVSTGPVDMS RFVGKRVYRS SPSQALQDVD AVLRRGAEEA QVHVATEASA EPVLETGKRA 120
  121 PRLVAITACP TGVAHTFMAA EALQQTAKRL GYDLQVETQG SVGARNPLSA QAIAEADVVL 180
  181 LAADIEVPTE RFAGKRIYRC GTGVALKQSE ATLNKALAEG RLESSTAGAQ TPAKQEKTGV 240
  241 YKHLLTGVSF MLPMVVAGGL MIALSFVFGI TAFKEEGTLA AALMQIGGET AFKLMVPLLA 300
  301 GYIAYSIADR PGLAPGMIGG MLASTLGAGF IGGIVAGFLA GYAAKAINKY ARLPQSLEAL 360
  361 KPILIIPLLA SLFTGLVMIY VVGKPVAGML EALTHFLDSM GTTNAILLGV LLGGMMCVDL 420
  421 GGPINKAAYA FSVGLLASQS YAPMAATMAA GMVPPIGLGI ATFIARRKFA QTEREAGKAA 480
  481 LVLGLCFISE GAIPFAAKDP LRVIPASIAG GALTGALSMY FGCKLMAPHG GLFVMLIPNA 540
  541 INHALLYLLA IVAGSLLTAV VYALVKRSET VELALEPAKA A