YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71043886, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLGYPASV PTTLEPGNTS SAWPLDATVG NVSAAPSVAG LAVSGVLIPL VYLVVCVVGL  60
   61 LGNSLVIYVV LRHTASPSVT NVYILNLALA DELFMLGLPF LAAQNALSYW PFGSLMCRLV 120
  121 MAVDGINQFT SIFCLTVMSV DRYLAVVHPT RSARWRTAPV ARTVSVAVWV ASAVVVLPVV 180
  181 VFSGVPHGMS TCHMQWPEPA AAWRAGFIIY TAALGFFGPL LVICLCYLLI VVKVRSAGRR 240
  241 VRAPSCQRRR HSERKVTRMV VAVVALFVLC WMPFYVLNIV NVVCPLPEEP AFFGLYFLVV 300
  301 ALPYANSCAN PILYGFLSYR FKQGFRRVLL RPSRRVRSQE PAGGPPEKTV EEQGEDREGE 360
  361 DREGEDGAGK QGEGKGMNGR VSLITQPGTS GQERPPSGKA SKDKQPLPLE ASAADKPGAL 420
  421 HISYL

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.61
Transmembrane Helix	48	71	0.88
Cytoplasmic	72	81	0.84
Transmembrane Helix	82	103	0.89
Non-Cytoplasmic	104	124	0.79
Transmembrane Helix	125	145	0.85
Cytoplasmic	146	164	0.86
Transmembrane Helix	165	186	0.91
Non-Cytoplasmic	187	206	0.90
Transmembrane Helix	207	232	0.90
Cytoplasmic	233	255	0.95
Transmembrane Helix	256	277	0.92
Non-Cytoplasmic	278	294	0.87
Transmembrane Helix	295	317	0.92
Cytoplasmic	318	425	0.98