YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71277968, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLVIGLIF LILLLLIVWR PFFKQKTQDV RVDSSLRDET NIRLYHEHKK EIEKDYGEGG  60
   61 IDEENYQYLL AELDNTLLQD IDTTSTEDKV TTTVVKPYSP LWPLGLSVFI IIFSVALYNK 120
  121 QGSYKILTEL PAGHGQQEAK SQEEMLKQRE TDAMAHIEKL QKHIESNPED SEAWYNLGQT 180
  181 YVAVGGFDEA VIAFNRVIKI EGEHADILGA IAQALYYKNN QQISDQVQKY IDKALALDID 240
  241 DPSTNILLGM HNFIGENYQQ AVIHWQRVID ANNQGVNITA LKEAVAEANN RLGVSASSSA 300
  301 EQSVSSSADN PADAAGPQLK VSVRLSDDIA KQLAQGEDRV VFIYAVPTNG QRMPLAAVKM 360
  361 KASDLPTIVV LNNSQAMSSE NNLSSVDKVH VYAIVSMQGG VGIKSGDYKA QALGIDVNRS 420
  421 EALELVVNKL VE

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.52
Transmembrane Helix	4	23	0.62
Cytoplasmic	24	98	0.52
Transmembrane Helix	99	118	0.51
Non-Cytoplasmic	119	432	0.91