YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143731, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKHDITVAD TDVNVPTAQQ RQVLRCTNDT LTTAMDDIAE ETAIALVYNG ISHVVMMSTP  60
   61 HDLYDLAIGF SLSEKIVDDA SEILDISATK QALGIEVNIT VSNRAVWRLK QQRRNMTGRT 120
  121 GCGLCGAESL QQAMKNQQTS IADGQKNKKA PRELSELTNL AIQKAVVDLQ GHQPLQQMTG 180
  181 AVHAAAWCDE NGSIKLIRED IGRHNALDKL IGALSASNIV INHSSFLLIS SRASYEMISK 240
  241 AQVAGISMLV AVSAPTALAI NIAKNTGMTL VGFARNGRHT IYS

Type	Start	End	Confidence
Cytoplasmic	1	240	0.49
Transmembrane Helix	241	263	0.61
Non-Cytoplasmic	264	283	0.62