YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278130, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.90
Transmembrane Helix	27	48	0.87
Non-Cytoplasmic	49	246	0.99
Transmembrane Helix	247	270	0.88
Cytoplasmic	271	295	0.86
Transmembrane Helix	296	321	0.80
Non-Cytoplasmic	322	345	0.91
Transmembrane Helix	346	368	0.89
Cytoplasmic	369	378	0.82
Transmembrane Helix	379	398	0.94
Non-Cytoplasmic	399	405	0.79
Transmembrane Helix	406	432	0.82
Cytoplasmic	433	452	0.86
Transmembrane Helix	453	474	0.92
Non-Cytoplasmic	475	682	0.96
Transmembrane Helix	683	702	0.93
Cytoplasmic	703	729	0.86
Transmembrane Helix	730	752	0.89
Non-Cytoplasmic	753	769	0.82
Transmembrane Helix	770	792	0.91
Cytoplasmic	793	803	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLTSFTNE IKIILTTHIA FYRRHPWLMA LFILGFSLGS ALLTAISGLN QEAKTRYQHS  60
   61 SALINNPVTH LIKPLTGKQT IDGNLWINLR QQGFINAQPV LRGRLKTNDD KTLAIQGVDT 120
  121 LLWLNNPQYK QPNENDNKTP SHFSLSTLLV DSQFAGRLQT KTGSQAQFVL KNGQVQPDIR 180
  181 LMDNVGLWAI TDIAHADYLL EAKGQLSFIE LSHVTELQVV QIKQLIAGKA QLIDAEQQSF 240
  241 DVLSQAFFFN LTALAMLGYI VAVFLSFNAI KLTLTARQKL IKQMQLLGCT KLSIQLSLSI 300
  301 ELIIVSLCTA LIGTLGGYFI ANGLVLDVNR TLVGLYQLDK ALVIHWQWTN VLLGFALNIS 360
  361 ALAVILLTQA KQVASKVQLI FYALLASTSV GLIWLLNYAT NEYQALLLCF TLLVLFILLV 420
  421 PKALSGLVAL PFTLSNPLAQ WLHADTRFHI KDLHIAIIAI LVALGSAIGM QIMVKSFSTT 480
  481 LNAHLEKQLS ADIYLRSDKI DHNLRQTLSH LPEVAQLSIY MKSEGKVNNV PAKLSSFGEN 540
  541 FEHYLQISLT SGSPISDKNF MDKGCLANEQ SKIKFGSSIG DVAVFEQNSM HFNCRITGFF 600
  601 YDYGNPSMSL LTLEKRQRAA ALNTEFVGYS IRLNSSSTVA AFSERLVNEF KQDSTLILPN 660
  661 KRFKQIANAL FDDTFVVTKA LNGFILAIAL LSLCTSLLSL SVNQLKQLTI LRNLGVTQQQ 720
  721 LLTMKLLQTG GIVLFTALFA IPLGFALGFA LLKFVMPIAF GWTIHFSLDL TSLFIMCLTL 780
  781 VGVSVLCAYL PIRKLTNLEA KES