YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278603, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKYIAECIG TFWLVLGGCG SAVLAAGFPD VGIGLLGVSF AFGLTVLTMA YAIGHISGCH  60
   61 LNPAVSVGLW AGGRFPANEL MPYIIAQVIG AILGAGALYL IASGQPSFDL SAGFASNGYG 120
  121 AHSPGGYSMT AALVAEVVLT MMFIFVIMGA TDKRAPAGLA PIAIGLCLTL IHLISIPVTN 180
  181 TSVNPARSTG VALFVGDWAV AQLWLFWVAP IVGGFIGAKL YRLVAKEEQE DS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	28	0.93
Non-Cytoplasmic	29	39	0.60
Transmembrane Helix	40	59	0.78
Cytoplasmic	60	79	0.71
Transmembrane Helix	80	102	0.91
Non-Cytoplasmic	103	126	0.90
Transmembrane Helix	127	148	0.93
Cytoplasmic	149	156	0.83
Transmembrane Helix	157	176	0.95
Non-Cytoplasmic	177	199	0.87
Transmembrane Helix	200	221	0.87
Cytoplasmic	222	232	0.92