YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144830, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.62
Transmembrane Helix	10	31	0.57
Non-Cytoplasmic	32	350	0.99
Transmembrane Helix	351	371	0.91
Cytoplasmic	372	377	0.78
Transmembrane Helix	378	399	0.91
Non-Cytoplasmic	400	404	0.77
Transmembrane Helix	405	425	0.92
Cytoplasmic	426	474	0.97
Transmembrane Helix	475	496	0.90
Non-Cytoplasmic	497	507	0.83
Transmembrane Helix	508	532	0.88
Cytoplasmic	533	563	0.95
Transmembrane Helix	564	583	0.94
Non-Cytoplasmic	584	900	0.99
Transmembrane Helix	901	920	0.96
Cytoplasmic	921	927	0.81
Transmembrane Helix	928	948	0.93
Non-Cytoplasmic	949	956	0.73
Transmembrane Helix	957	978	0.88
Cytoplasmic	979	998	0.90
Transmembrane Helix	999	1019	0.88
Non-Cytoplasmic	1020	1032	0.74
Transmembrane Helix	1033	1056	0.92
Cytoplasmic	1057	1066	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNKMIDWSI NNRLLVIIAL IATMAASIMV IPKLNLDAFP DVTNVQVAVN TEAPGLAAEE  60
   61 VEQLITYPIE AVMYALPDVE QVRSISKTGL SGVTVVFKEG TDIYFARQLV FERLQAAKEL 120
  121 IPQGVGTPAM GPNTSGLGQV FQYLLIADKD SGYDSMTLRS LNDWIVKLLV MPVDGVTDVL 180
  181 SFGGNVRQYQ VNIEPSKLLS YELTQDDIVT ALDNNNANVG GWYMNRGQEQ LVIRGTGWFN 240
  241 SGEAGLADIR QVPVKTVDGT VVTIDDVANV ALGSEIRQGA VTMTRRDAQG NIENLGEVVS 300
  301 GIVLKRMGAN TKATIDGINA RIPMINQALP EGVRFEPFYD QADLITKAVD TVVEALALAF 360
  361 IFIAIVLALF LMNLRATFLV LISIPISIAI ALMVMSWMGL SANLMSLGGI AVAIGMLVDG 420
  421 SVVMVENMFK HLNRPDSTHY KNAQARTLGT DADPHDVEHD EEGIPLRLKE AGKEVARPVF 480
  481 FAASIILVVF TPLFSFEGVE AKLFQPMAIS IILAVISAIL VALFVVPALA TFMFKKGVKE 540
  541 KESFVLKPLD KLYRKGLKAA MKHTKVVIIA SLLLLVGAAS LIPQIGTEFV PELEEGTINL 600
  601 RATLAPSASL ETALSVAPIL EQKLMEFPEV EYTLSRIGRA EIGGDPEPVN NIEIYIGLKP 660
  661 VSQWSSAENR VELQGLMEEE LEQFPGLLLN FSQPIATRVD ELLSGVKAQL AIKLFGPELD 720
  721 MLASKGQEIE AAIKQIDGAR DVALEQIAGE AQLVIKPKRQ QLSRFGLSVG DVMEVVKNGI 780
  781 GGVSAGQIIN GNERYDIYVR IEEKYRDNQE AIADLRIQSP TGAWVRLGDI ATVSFESGPP 840
  841 QVRRDDVQRR VVIQANVQGR DMGSVVSDIR AVIDSKVDLP AGYSVVIGGQ FENQQRAQQR 900
  901 LAVVVPLSLA LIALLLYFAF GSVGQAMLIL VNVPLAVIGG IFSLYISGQY LSVPSSVGFI 960
  961 TLFGVAVLNG VVMVESINQL VKDGLDTSKA VFDGAVSRLR PVLMTAITSA LGLIPMLMSN1020
 1021 GVGAEIQRPL ASVIVGGLVT ATLLTLFVLP VLYAWFSKAK IKDLRG