YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279622, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYVLALFFY RVFLLLLTPI VLLVLLIRSF NHPEYRQRLF ERLGFFPKPY KQGGIVVHAA  60
   61 SVGEVIALKS FIEKLLVNYP DLPITITSFT PTGSAQITKL FGRRVQHGYL PLDIFPCTTL 120
  121 FLHRLKPKMI IFMETELWPN LIAQCDQHQI KLLLINGRLS KKSLTSYQKL SALMAPCLNR 180
  181 FDMILTQSQE NLTHFLQLGA HQSRCVNSGN LKFDISVNEQ VINKKAELAK LLFADDSQAK 240
  241 RTVWLVASTH EGDEAITLTA FKELLSQYPS LLLVLVPRHP ERFEQVANLC LTKQLSLAKR 300
  301 SENTIINNEQ VWLLDSLGEL MAAFALSDIV TMGGSFSEVG GHNPLEPALF NKPVIVGHNM 360
  361 SNFNEIMQQL RQENAIIELT NNTPTNESSA QLVNEVSALL QQPTRQKTLG ENALKVVLKN 420
  421 QGASEKTLAQ VVNLLPTRVN ITSTTPLGDN S

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	27	0.77
Non-Cytoplasmic	28	451	0.95